Rike
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e3a17b699e
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update version
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2022-05-12 18:19:33 +02:00 |
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Rike
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99880654bf
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add output default bam
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2022-05-12 18:06:15 +02:00 |
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Rike
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3fda3903dc
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revert markduplciatespark container
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2022-05-12 17:40:42 +02:00 |
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Rike
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fd7ee6799a
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update version also for spark containers
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2022-05-12 15:55:11 +02:00 |
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Maxime U. Garcia
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e04970b7d2
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typo in command line (#1523)
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2022-04-13 15:15:44 +02:00 |
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Maxime U. Garcia
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409af2f27c
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Improve syntax/logic coherence in all gatk4 plugins (#1459)
* feat: code polishing
* Apply suggestions from code review
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
* code polishing
* more code polishing
* code polishing
* tests for applybqsrspark
* fix typo
* no need to check md5sum for versions.yml
* fix: use correct syntax
* code polishing again
* add tests for markduplicatesspark
* simplify mergevcfs tests
* add tests for baserecalibratorspark
* fix: path to entry
* code polishing
* fix linting
* simplify module
* update meta.yml
* fix pair mode
* fix: MITO mode
* more tests
* fix command
* bad copy paste
* fix typos
* fix tests
* fix test
* update meta.yml
* correct versions.yml in all test.yml
* code polishing
* code polishing
* more code polishing
* fix args
* add tmpdir for all
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
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2022-04-12 17:15:39 +02:00 |
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