Lauri Mesilaakso
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e757966566
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 18:41:36 +03:00 |
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nvnieuwk
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486cc1d142
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Merge pull request #1611 from nvnieuwk/split-hap.py-into-two-modules
Split hap.py into two parts
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2022-05-04 15:49:31 +02:00 |
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Nicolas Vannieuwkerke
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42bdc5471e
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Changed the pytest location of happy
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2022-05-04 15:40:34 +02:00 |
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Nicolas Vannieuwkerke
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f875aec46b
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Split the module into two parts
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2022-05-04 15:29:48 +02:00 |
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nvnieuwk
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994cd6d171
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Merge pull request #1610 from nvnieuwk/new-module-hap.py
New module hap.py
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2022-05-04 15:00:45 +02:00 |
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Nicolas Vannieuwkerke
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3c66138672
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Linting issue + removed the contains lines
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2022-05-04 14:49:17 +02:00 |
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Nicolas Vannieuwkerke
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5889d6c923
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Another possible fix for the pytest issues
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2022-05-04 14:46:15 +02:00 |
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Nicolas Vannieuwkerke
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583ea13800
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Another try to fix the pytest issues
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2022-05-04 14:22:55 +02:00 |
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Nicolas Vannieuwkerke
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17dbd2bb82
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Linting issue fixed
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2022-05-04 14:18:56 +02:00 |
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Nicolas Vannieuwkerke
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505ab03803
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fixed a description
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2022-05-04 14:14:53 +02:00 |
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Nicolas Vannieuwkerke
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c1393bf999
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Possible fix for the pytest errors?
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2022-05-04 14:14:01 +02:00 |
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Nicolas Vannieuwkerke
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177a7e49f2
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Fixed a linting issue
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2022-05-04 14:06:42 +02:00 |
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Nicolas Vannieuwkerke
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000b8ee2e0
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Merge branch 'new-module-hap.py' of github.com:nvnieuwk/modules into new-module-hap.py
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2022-05-04 14:05:23 +02:00 |
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Nicolas Vannieuwkerke
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065a5d6a7f
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Fixed a linting issue
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2022-05-04 14:05:21 +02:00 |
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nvnieuwk
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c9808cb97f
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Merge branch 'master' into new-module-hap.py
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2022-05-04 14:01:02 +02:00 |
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Nicolas Vannieuwkerke
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37338ecee3
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Finished the module
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2022-05-04 14:00:02 +02:00 |
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Nicolas Vannieuwkerke
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c517ce9b4d
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Added the module and some simple testing
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2022-05-04 13:42:12 +02:00 |
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Lauri Mesilaakso
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530b5ac661
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-04 09:53:46 +03:00 |
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Chris Cheshire
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7949c1f048
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Merge pull request #1607 from luslab/expected_error_fix
Bowtie2 - Added support for large indexes and improved error reporting
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2022-05-03 22:27:45 +01:00 |
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Chris Cheshire
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79e64cdd1f
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Merge branch 'master' into expected_error_fix
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2022-05-03 22:21:28 +01:00 |
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Lauri Mesilaakso
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12f79c2101
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 17:03:02 +03:00 |
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ljmesi
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a39fa4e003
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Fix checksum for one file
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2022-05-03 15:47:49 +02:00 |
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nvnieuwk
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1f906a7c6a
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Merge pull request #1608 from nvnieuwk/vardict-java-update
Small update to vardict-java
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2022-05-03 15:37:52 +02:00 |
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Nicolas Vannieuwkerke
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96d4a31cc1
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Moved the BED file to the main tuple
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2022-05-03 15:31:05 +02:00 |
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ljmesi
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034352dbbf
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Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq
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2022-05-03 15:18:12 +02:00 |
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ljmesi
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5510ea39fe
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Test --no-name to solve inconsistent checksums
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2022-05-03 15:18:09 +02:00 |
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Lauri Mesilaakso
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a65e76e3dd
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 14:30:54 +03:00 |
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Chris Cheshire
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6f35537d40
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Merge branch 'master' into expected_error_fix
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2022-05-03 12:21:51 +01:00 |
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Chris Cheshire
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1baf143607
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Merge pull request #1548 from rpetit3/rp3-add-shigatyper
add module for shigatyper
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2022-05-03 12:21:43 +01:00 |
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Chris Cheshire
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829183ee84
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:16:54 +01:00 |
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Chris Cheshire
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b3ee6384e6
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Merge pull request #1604 from nf-core/add-slimfastq
feat: add module for slimfastq
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2022-05-03 12:16:41 +01:00 |
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Chris Cheshire
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6015478b72
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Merge branch 'master' into add-slimfastq
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2022-05-03 12:11:19 +01:00 |
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Chris Cheshire
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d7fb969a74
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Merge branch 'master' into rp3-add-shigatyper
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2022-05-03 12:10:23 +01:00 |
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Chris Cheshire
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40e6bd9dc1
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bowtie2|fix tags error
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2022-05-03 12:07:04 +01:00 |
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Chris Cheshire
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0f1ee7e50d
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bowtie2|test fixes
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2022-05-03 12:04:51 +01:00 |
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Chris Cheshire
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61f68913fe
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Merge branch 'master' into expected_error_fix
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2022-05-03 11:49:35 +01:00 |
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Chris Cheshire
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768073be63
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bowtie2|Added support for large indexes
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2022-05-03 11:46:19 +01:00 |
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Lauri Mesilaakso
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6367c6a1ad
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:41:25 +03:00 |
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James A. Fellows Yates
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b61cdc7355
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Merge pull request #1570 from nvnieuwk/vardict-java
new_module:vardict-java
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2022-05-03 10:26:41 +02:00 |
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nvnieuwk
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f85787b19e
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Merge branch 'master' into vardict-java
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2022-05-03 10:17:04 +02:00 |
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nvnieuwk
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8187641280
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:45 +02:00 |
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nvnieuwk
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11c6faf433
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:36 +02:00 |
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nvnieuwk
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01085b3e09
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:30 +02:00 |
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nvnieuwk
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1609dfc96d
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:20 +02:00 |
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nvnieuwk
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3cdbdf50fc
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:16:14 +02:00 |
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nvnieuwk
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2dff193b54
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:59 +02:00 |
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nvnieuwk
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7c89af359c
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Update modules/vardictjava/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
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2022-05-03 10:15:51 +02:00 |
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Nicolas Vannieuwkerke
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49ba3adbde
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Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java
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2022-05-03 10:15:33 +02:00 |
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Nicolas Vannieuwkerke
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d33253513f
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put the version on top of the file
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2022-05-03 10:15:30 +02:00 |
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Lauri Mesilaakso
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773e6f8e93
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Merge branch 'master' into add_compression_to_bam2fq
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2022-05-03 11:13:55 +03:00 |
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