7 commits

Author	SHA1	Message	Date
Harshil Patel	e937c7950a	Rename software/ directory to modules/ to re-organise module structure (#567) ... * Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml	2021-07-07 10:10:18 +01:00
Harshil Patel	b3278a1e63	Modules TLC (#551) ... * Modules TLC * Fix all the tests	2021-07-01 16:13:01 +01:00
Kevin Menden	043a7d1e3c	remove deprecated test tags (#440) ... * remove deprecated test tags * fix bowtie, gatk4/applybsqr * fix gatk4 baserecalibrator * fixed shovill * fixed yara/mapper * fixed kallistobustools/ref paths	2021-04-13 18:03:09 +01:00
Edmund Miller	a3684d9594	Lint modules ci (#389) ... * ci: Add modules lint step Moved it ahead of the nextflow install so ideally it'll fail before we bother doing any more setup * ci: _ => / * Update tests/config/pytest_software.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>	2021-04-08 09:10:52 +01:00
Maxime Garcia	66fd57a8bc	fix: update tiddit_sv tests (#272)	2021-03-15 14:02:20 +00:00
JoseEspinosa	155c2a1185	Check only for vcf file to exists (includes cmd)	2021-02-26 07:14:29 +01:00
MaxUlysse	f62196a4a6	feat: add tiddit_sv module	2021-02-24 15:59:10 +01:00