Anders Goncalves da Silva
|
8f546a1f95
|
Add ivar consensus
|
2021-02-09 10:26:35 -08:00 |
|
JoseEspinosa
|
12ae7b0bff
|
Adding blast blastn module
|
2021-02-09 16:58:36 +01:00 |
|
JoseEspinosa
|
c23b355b35
|
Add blast makeblastdb module
|
2021-02-09 15:44:34 +01:00 |
|
JoseEspinosa
|
c93e96101a
|
Add untar module
|
2021-02-09 11:50:32 +01:00 |
|
JoseEspinosa
|
9b65961828
|
Fix file output path on test
|
2021-02-09 10:22:50 +01:00 |
|
JoseEspinosa
|
f7f06dd6e8
|
Add gunzip module
|
2021-02-09 10:05:55 +01:00 |
|
Harshil Patel
|
46e5df2cf7
|
Merge pull request #151 from drpatelh/bedtools
Follow up fixes for bedtools modules added in #79
|
2021-02-09 01:54:31 +00:00 |
|
Harshil Patel
|
84cf5ea2ef
|
Merge pull request #153 from JoseEspinosa/bedtools_maskfasta
Add bedtools maskfasta module
|
2021-02-08 23:11:00 +00:00 |
|
Harshil Patel
|
132dabbbb6
|
Update tests/data/bed/C.bed
|
2021-02-08 23:03:26 +00:00 |
|
JoseEspinosa
|
1b3e5e0283
|
Fixing module name in test.yml
|
2021-02-08 23:45:01 +01:00 |
|
JoseEspinosa
|
02d10c25a3
|
Add bedtools maskfasta module
|
2021-02-08 23:41:10 +01:00 |
|
drpatelh
|
0b9e32e32d
|
Remove complement suffix from tests
|
2021-02-08 22:25:13 +00:00 |
|
Harshil Patel
|
0f6830f7cc
|
Update tests/software/bcftools/consensus/main.nf
|
2021-02-08 21:41:24 +00:00 |
|
JoseEspinosa
|
f8882de456
|
Renaming test ymls just to: software tool
|
2021-02-08 21:56:53 +01:00 |
|
JoseEspinosa
|
f4e322f88d
|
Merging upstream changes
# Conflicts:
# .github/filters.yml
|
2021-02-08 18:09:41 +01:00 |
|
JoseEspinosa
|
4fa38ebb7a
|
Separate test data to break dependencies between bcftools modules tests
|
2021-02-08 16:51:21 +01:00 |
|
JoseEspinosa
|
83cc25860d
|
Rearranging tests to test each module separately
|
2021-02-08 15:16:51 +01:00 |
|
JoseEspinosa
|
5071bf5914
|
Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon
|
2021-02-08 10:45:57 +01:00 |
|
drpatelh
|
83a50d8ae0
|
Rename SOFTWARE_TOOL to TOOL_SUBTOOL
|
2021-02-07 23:20:53 +00:00 |
|
drpatelh
|
5779b180da
|
Fix bedtools sort module
|
2021-02-07 21:32:43 +00:00 |
|
drpatelh
|
f3b5af4ed5
|
Fix bedtools slip module
|
2021-02-07 21:32:20 +00:00 |
|
drpatelh
|
38964ecfc0
|
Fix bedtools intersect module
|
2021-02-07 21:32:01 +00:00 |
|
drpatelh
|
a37b116186
|
Fix bedtools merge module
|
2021-02-07 21:31:39 +00:00 |
|
drpatelh
|
4564ef0e54
|
Fix bedtools genomecov module
|
2021-02-07 21:31:21 +00:00 |
|
drpatelh
|
a0c08e0c06
|
Fix bedtools complement module
|
2021-02-07 21:31:02 +00:00 |
|
Harshil Patel
|
0393d39105
|
Update tests/software/bedtools/complement/main.nf
|
2021-02-07 20:35:51 +00:00 |
|
Harshil Patel
|
5269c1ec60
|
Update tests/software/bedtools/intersect/main.nf
|
2021-02-07 20:35:12 +00:00 |
|
Harshil Patel
|
8841af1267
|
Update tests/software/bedtools/merge/main.nf
|
2021-02-07 20:34:30 +00:00 |
|
Harshil Patel
|
b068f2fc53
|
Update tests/software/bedtools/sort/main.nf
|
2021-02-07 20:33:02 +00:00 |
|
JoseEspinosa
|
26829497d5
|
Fixing typo on path for md5 check
|
2021-02-02 12:19:57 +01:00 |
|
JoseEspinosa
|
e7f15feccf
|
Adding --no-version to bcftools_isec for tests md5 check
|
2021-02-02 11:00:02 +01:00 |
|
JoseEspinosa
|
3a40ec5664
|
Adding bcftools_isec taking a path with several vcfs and its tests
|
2021-02-02 10:50:45 +01:00 |
|
JoseEspinosa
|
8e4764b8ed
|
bcftools_filter adding argument to test to enable md5 check
|
2021-02-02 10:19:34 +01:00 |
|
JoseEspinosa
|
c25f8f0f6c
|
Fixing tests
|
2021-02-02 09:57:55 +01:00 |
|
JoseEspinosa
|
382ea31e7e
|
Adding bcftools test data
|
2021-02-02 09:18:28 +01:00 |
|
JoseEspinosa
|
cee37852cd
|
Merge remote-tracking branch 'upstream/master' into bcftools_viralrecon
|
2021-02-02 09:15:20 +01:00 |
|
JoseEspinosa
|
a3ce63c79c
|
Adding tests for bcftools
|
2021-02-02 09:14:00 +01:00 |
|
drpatelh
|
f84e5b59ca
|
Rename bowtie_index to bowtie_build
|
2021-02-01 17:53:31 +00:00 |
|
Harshil Patel
|
0a41130276
|
Merge pull request #131 from KevinMenden/fastp-module
Adding fastp module
|
2021-02-01 13:43:35 +00:00 |
|
Harshil Patel
|
e851da8640
|
Merge pull request #130 from KevinMenden/master
Adding a QUAST module
|
2021-02-01 13:17:57 +00:00 |
|
Kevin Menden
|
0bd8506ea1
|
Update tests/software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:04:08 +01:00 |
|
Kevin Menden
|
05370b5e16
|
Update tests/software/quast/main.nf
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
|
2021-02-01 14:03:49 +01:00 |
|
kevinmenden
|
e9e795633d
|
added fastp tests
|
2021-02-01 14:02:06 +01:00 |
|
kevinmenden
|
a342296d70
|
fixed test md5s
|
2021-02-01 13:36:25 +01:00 |
|
kevinmenden
|
b5298f94d8
|
refactored quast module
|
2021-02-01 13:13:21 +01:00 |
|
Harshil Patel
|
c74d8a1711
|
Merge pull request #128 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon 2
|
2021-02-01 09:56:11 +00:00 |
|
Harshil Patel
|
2c962f34df
|
Merge pull request #110 from luslab/master
Add SEACR module containing a single CALLPEAK process
|
2021-02-01 09:48:15 +00:00 |
|
JoseEspinosa
|
8fb6b80abd
|
Fixing some md5 hashes
|
2021-01-30 23:08:17 +01:00 |
|
Harshil Patel
|
eadbea4b83
|
Merge pull request #127 from JoseEspinosa/bowtie2_viralrecon
Bowtie2 viralrecon
|
2021-01-30 13:22:30 +00:00 |
|
sruthipsuresh
|
7a1c2a2eb5
|
Fixed slop module
|
2021-01-29 23:17:44 -06:00 |
|