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Renaming test ymls just to: software tool

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This commit is contained in:
JoseEspinosa 2021-02-08 21:56:53 +01:00
parent 7a0ba85843
commit f8882de456
7 changed files with 7 additions and 8 deletions
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2
tests/software/bcftools/bgzip/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools bgzip test workflow
- name: bcftools bgzip
command: nextflow run ./tests/software/bcftools/bgzip -entry test_bcftools_bgzip -c tests/config/nextflow.config
tags:
- bcftools

2
tests/software/bcftools/consensus/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools consensus test workflow
- name: bcftools consensus
command: nextflow run ./tests/software/bcftools/consensus -entry test_bcftools_consensus -c tests/config/nextflow.config
tags:
- bcftools

2
tests/software/bcftools/filter/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools filter test workflow
- name: bcftools filter
command: nextflow run ./tests/software/bcftools/filter -entry test_bcftools_filter -c tests/config/nextflow.config
tags:
- bcftools

2
tests/software/bcftools/isec/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools isec test workflow
- name: bcftools isec
command: nextflow run ./tests/software/bcftools/isec -entry test_bcftools_isec -c tests/config/nextflow.config
tags:
- bcftools

2
tests/software/bcftools/stats/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools bgzip test workflow
- name: bcftools stats
command: nextflow run ./tests/software/bcftools/stats -entry test_bcftools_stats -c tests/config/nextflow.config
tags:
- bcftools

3
tests/software/bcftools/tabix/main.nf
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@ -2,14 +2,13 @@
nextflow.enable.dsl = 2
include { BCFTOOLS_BGZIP } from '../../../../software/bcftools/bgzip/main.nf' addParams( options: [:] )
include { BCFTOOLS_TABIX } from '../../../../software/bcftools/tabix/main.nf' addParams( options: [:] )
workflow test_bcftools_tabix {
def input = []
input = [ [ id:'test' ], // meta map
[ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ]
[ file("${launchDir}/tests/data/vcf/test.vcf.gz", checkIfExists: true) ] ]
BCFTOOLS_TABIX ( input )
}

2
tests/software/bcftools/tabix/test.yml
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@ -1,4 +1,4 @@
- name: Run bcftools tabix test workflow
- name: bcftools tabix
command: nextflow run ./tests/software/bcftools/tabix -entry test_bcftools_tabix -c tests/config/nextflow.config
tags:
- bcftools