18 commits

Author	SHA1	Message	Date
James A. Fellows Yates	1fc0d3de4b	Merge branch 'gatk3-indelrealigner' into upstream-for-indel	2022-06-08 20:30:19 +02:00
James A. Fellows Yates	0d087b4890	Update modules/gatk/realignertargetcreator/main.nf	2022-06-03 21:33:54 +02:00
James A. Fellows Yates	d292f822e4	Merge branch 'master' into gatk-realigntargetcreator	2022-06-03 21:33:22 +02:00
James A. Fellows Yates	e827a042ce	Update modules/gatk/unifiedgenotyper/main.nf ... Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>	2022-06-03 21:24:03 +02:00
James Fellows Yates	a565d9072a	Add GATK UnifiedGenotyper	2022-06-02 21:39:39 +02:00
James Fellows Yates	a14855dbe8	Start meta	2022-06-02 21:22:21 +02:00
James Fellows Yates	544b62df45	Star work on GATK UG	2022-06-02 21:11:17 +02:00
James Fellows Yates	de88adc926	Standardise parameters (no tests yet until realigntarget creator ready)	2022-06-02 20:35:34 +02:00
James Fellows Yates	9a4f22e8d1	Merge branch 'gatk-realigntargetcreator' of github.com:jfy133/nf-core-modules into gatk-realigntargetcreator	2022-06-02 20:32:03 +02:00
James Fellows Yates	c469a2b35e	Fux tests	2022-06-02 20:32:00 +02:00
James Fellows Yates	599b264280	Standaridse parameters	2022-06-02 20:27:16 +02:00
James A. Fellows Yates	b1edcc6e94	Update modules/gatk/realignertargetcreator/main.nf	2022-06-02 20:26:09 +02:00
James A. Fellows Yates	43ef3841d1	remove duplciate path	2022-06-02 20:25:12 +02:00
James Fellows Yates	14c63f9ccc	Changes after review	2022-06-02 20:24:14 +02:00
James Fellows Yates	7633d7816b	Add GATK(3)/realignertargetcreator	2022-05-31 20:35:54 +02:00
James Fellows Yates	d39ba08e02	Prepare main module code	2022-05-31 20:19:49 +02:00
James Fellows Yates	c1ac3fbb59	Skeleton	2022-05-31 20:13:48 +02:00
James Fellows Yates	7ffe98ac8b	Add gatk/indelrealigner	2022-05-30 21:12:21 +02:00