3273 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Phil Ewels	93f7b26aa2	Use submodules for test data	2019-12-06 09:24:33 +01:00
Phil Ewels	36df850298	Added test-datasets as a git submodule	2019-12-06 09:19:00 +01:00
Phil Ewels	51bd2c0277	Ansi log false for tests	2019-12-05 22:20:02 +01:00
Phil Ewels	e2a205c8df	Added nextflow.config files for all	2019-12-05 22:18:33 +01:00
Phil Ewels	eb41e5ebba	FastQC: actually run a test	2019-12-05 22:11:12 +01:00
Phil Ewels	ef486a908b	Use empty dict instead for workflow	2019-12-05 16:09:28 +01:00
Phil Ewels	d682c6f7a8	Workflows: test everything on paths	2019-12-05 16:08:12 +01:00
Phil Ewels	a065ac3532	Actions: install nextflow	2019-12-05 16:03:00 +01:00
Phil Ewels	acc4eb0054	GitHub actions - run nextflow in a docker image	2019-12-05 15:57:32 +01:00
Phil Ewels	af766a9cc7	Added TrimGalore	2019-12-05 15:53:38 +01:00
Phil Ewels	497573fc5d	Refactor GitHub actions workflows	2019-12-05 15:44:10 +01:00
Phil Ewels	8837c2b81d	GitHub actions: paths, not path	2019-12-05 15:39:01 +01:00
Phil Ewels	97fbd32644	Added samtools sort + index ... Added container to FastQC	2019-12-05 15:36:35 +01:00
Phil Ewels	5e4c023edd	Start work on FastQC module files	2019-12-05 15:18:09 +01:00
Phil Ewels	4582ab344c	Add GitHub Actions, put FastQC in to a directory	2019-12-05 14:52:43 +01:00
Harshil Patel	ada7b5f9a3	Merge pull request #5 from ewels/master ... Replace Slack join URL	2019-07-30 15:33:41 +01:00
Phil Ewels	44b6e1250d	Replace Slack join URL	2019-07-30 16:31:44 +02:00
drpatelh	adb9074f55	Typo	2019-07-26 16:06:49 +01:00
drpatelh	56608c0ad4	FastQC prototype with docs	2019-07-26 16:05:13 +01:00
drpatelh	c4456ad334	Fix links	2019-07-26 13:38:08 +01:00
drpatelh	eb9aeea775	Refine README	2019-07-26 13:30:26 +01:00
drpatelh	ef8c13a7d8	Fill out repo	2019-07-26 10:19:07 +01:00
drpatelh	8f5a297705	first commit	2019-07-26 09:54:25 +01:00