Anders Goncalves da Silva
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ed74d366bf
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Clean up ivar trim main.nf
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2021-02-12 16:03:07 -08:00 |
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Anders Goncalves da Silva
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6dca7799e6
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Add ivar trim
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2021-02-12 16:02:10 -08:00 |
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Harshil Patel
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96d3b0a18b
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Update tests/software/ivar/consensus/main.nf
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2021-02-12 23:02:25 +00:00 |
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Harshil Patel
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f8916060f8
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Update tests/software/ivar/consensus/main.nf
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2021-02-12 23:02:19 +00:00 |
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Anders Goncalves da Silva
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ffc849761d
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Edit test to output mpileup and passing args to samtools
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2021-02-12 14:43:19 -08:00 |
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Anders Goncalves da Silva
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487ec7b793
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Fix test.yml
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2021-02-12 14:42:42 -08:00 |
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Anders Goncalves da Silva
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8b3c16a518
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Add ref FASTA to test main.nf
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2021-02-12 11:29:16 -08:00 |
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Anders Goncalves da Silva
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df9125b46a
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Fix test name
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-10 12:05:01 -08:00 |
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Anders Goncalves da Silva
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40bbf94ef9
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Update filename for outputted mpileup file in test
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-10 12:04:46 -08:00 |
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Anders Goncalves da Silva
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68de6fef0d
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Fix indentation
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-10 12:04:15 -08:00 |
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Anders Goncalves da Silva
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ffa9cf85b1
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Clean up header params
I used these for testing and forgot to remove them
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-10 12:03:50 -08:00 |
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Anders Goncalves da Silva
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1f6419f8f5
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Fix indentation
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
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2021-02-10 10:55:24 -08:00 |
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Anders Goncalves da Silva
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8f546a1f95
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Add ivar consensus
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2021-02-09 10:26:35 -08:00 |
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