Rike
ef5f145342
Generalize Bam2Cram do either conversion
2022-05-09 15:22:54 +02:00
Jasmin F
453d5b66a4
Add Bacteroides fragilis GFF file
2022-05-09 14:46:18 +02:00
Mahesh Binzer-Panchal
32b0fdc9d9
Merge branch 'master' into meryl_count
2022-05-09 10:05:28 +02:00
MaxUlysse
3d428e2933
fix spacing
2022-05-07 15:28:40 +02:00
Jose Espinosa-Carrasco
e2acf28c8f
Merge branch 'master' into maxulysse-patch-1
2022-05-06 23:53:27 +02:00
Matthias De Smet
0752b82c9f
Merge branch 'master' into update/snapaligner
2022-05-06 18:57:37 +02:00
Maxime U. Garcia
ac217479e9
Update tests/config/test_data.config
...
Co-authored-by: Jose Espinosa-Carrasco <kadomu@gmail.com>
2022-05-06 18:18:32 +02:00
Maxime U. Garcia
ec7b460fa4
add missing file
2022-05-06 17:54:35 +02:00
Mahesh Binzer-Panchal
67481c6d54
Start Meryl count
2022-05-06 15:04:04 +00:00
Matthias De Smet
26d2231e85
fix linting
2022-05-06 14:16:38 +02:00
Mahesh Binzer-Panchal
a9f23bb477
Merge branch 'master' into busco
2022-05-06 13:49:01 +02:00
Matthias De Smet
09e729ad41
added sha256sum
2022-05-06 10:28:14 +02:00
Matthias De Smet
853b623969
new module: md5sum
2022-05-06 09:20:40 +02:00
Sateesh Peri
3414d3aba3
Merge branch 'master' into busco
2022-05-05 10:08:55 -04:00
JIANHONG OU
a8bc386ea3
Merge branch 'master' into motus_downloaddb
2022-05-05 09:36:25 -04:00
Carpanzano
9083d3bb3d
integrating suggestions from PR comments, including recovery of tests for kronadb and more detailed explanation of input database in yml file
2022-05-05 13:51:41 +02:00
Mahesh Binzer-Panchal
58ea709f7f
Merge branch 'master' into busco
2022-05-05 09:34:14 +02:00
James A. Fellows Yates
35b5ba673f
Merge branch 'master' into motus_downloaddb
2022-05-04 20:58:08 +02:00
Simone Carpanzano
162f8edf54
Merge branch 'master' into firstbranch
2022-05-04 16:35:25 +02:00
Carpanzano
6b8ca501ed
fixing suggestions from PR
2022-05-04 16:34:52 +02:00
Nicolas Vannieuwkerke
42bdc5471e
Changed the pytest location of happy
2022-05-04 15:40:34 +02:00
Nicolas Vannieuwkerke
f875aec46b
Split the module into two parts
2022-05-04 15:29:48 +02:00
Mahesh Binzer-Panchal
5986a3efbf
Merge branch 'master' into busco
2022-05-04 15:09:54 +02:00
Nicolas Vannieuwkerke
c517ce9b4d
Added the module and some simple testing
2022-05-04 13:42:12 +02:00
Mahesh Binzer-Panchal
5f4781adaa
Merge branch 'master' into busco
2022-05-03 15:27:10 +02:00
Chris Cheshire
829183ee84
Merge branch 'master' into rp3-add-shigatyper
2022-05-03 12:16:54 +01:00
Chris Cheshire
6015478b72
Merge branch 'master' into add-slimfastq
2022-05-03 12:11:19 +01:00
Chris Cheshire
d7fb969a74
Merge branch 'master' into rp3-add-shigatyper
2022-05-03 12:10:23 +01:00
Mahesh Binzer-Panchal
ddbe6e8f40
Merge branch 'master' into busco
2022-05-03 10:48:03 +02:00
Matthias De Smet
1687bfcb85
Merge branch 'master' into add-slimfastq
2022-05-03 08:22:49 +02:00
Matthias De Smet
a67c06af81
Merge branch 'master' into vardict-java
2022-05-03 08:22:19 +02:00
Moritz E. Beber
16aa3915e3
feat: add module for slimfastq
2022-05-02 23:16:59 +02:00
Sateesh Peri
c56b371713
Merge branch 'master' into srst2/srst2
2022-05-02 12:13:11 -04:00
Simone Carpanzano
3d9c8a6bb1
Merge branch 'master' into firstbranch
2022-05-02 17:43:33 +02:00
Carpanzano
76a0e3ef04
updated config kraken report name
2022-05-02 17:40:50 +02:00
JIANHONG OU
b14f30936e
Merge branch 'nf-core:master' into motus_downloaddb
2022-05-02 08:42:09 -04:00
Matthias De Smet
bf416f2307
Merge branch 'master' into vardict-java
2022-05-02 10:43:47 +02:00
James Fellows Yates
44ed38beb8
Merge branch 'diamond-update' of github.com:jfy133/nf-core-modules into diamond-update
2022-04-29 21:06:09 +02:00
James Fellows Yates
39530b5ca7
Bump DIAMOND version to 2.0.15
2022-04-29 21:05:12 +02:00
Simone Carpanzano
05e283405c
Update test_data.config
2022-04-29 00:13:01 +02:00
Simone Carpanzano
a6026e6d30
Update test_data.config
2022-04-29 00:08:27 +02:00
Simone Carpanzano
a76be27d9f
Update test_data.config
2022-04-29 00:06:55 +02:00
Simone Carpanzano
f13a0070d0
Update test_data.config
2022-04-29 00:04:49 +02:00
Simone Carpanzano
10a3718ad6
Update test_data.config
...
add 'metagenome' in sarscov2
2022-04-29 00:03:54 +02:00
Matthias De Smet
a7ed1477ee
Merge branch 'master' into tool/elprep-merge
2022-04-28 21:14:30 +02:00
Sateesh Peri
f5c4aecde5
Merge branch 'master' into srst2/srst2
2022-04-28 13:49:51 -04:00
Robert A. Petit III
4b6ee6fc14
Merge branch 'master' into rp3-add-shigatyper
2022-04-28 09:51:36 -06:00
nvnieuwk
c9404ed266
Merge branch 'master' into vardict-java
2022-04-28 14:30:19 +02:00
JIANHONG OU
cdefbec669
add kimporttext module ( #1560 )
...
* add kimporttext module
* fix the Prettier error.
* fix the Prettier error.
* fix the test.yml
* fix the test.yml
* Update modules/krona/ktimporttext/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/krona/ktimporttext/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/krona/ktimporttext/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/krona/ktimporttext/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* Update modules/krona/ktimporttext/meta.yml
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
* update the test files;
simplify the main script of krona/ktimporttext.
* update the test file url for krona ktimporttext
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
2022-04-28 08:16:26 -04:00
nvnieuwk
1fd4719e9d
Merge branch 'master' into vardict-java
2022-04-28 09:09:07 +02:00