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Author SHA1 Message Date
Mahesh Binzer-Panchal
83a266ea70
Merge branch 'master' into meryl_unionsum 2022-05-09 16:16:08 +02:00
FriederikeHanssen
adc4ff868c
Merge branch 'master' into samtools_convert 2022-05-09 16:15:24 +02:00
Mahesh Binzer-Panchal
3f95464f05
Merge pull request #1636 from mahesh-panchal/meryl/histogram 
Add meryl histogram
 2022-05-09 16:15:13 +02:00
Rike
da79396f06 rename aligned to alignment 2022-05-09 16:07:49 +02:00
Rike
5bd456e5e8 rename file_type to output extension 2022-05-09 16:06:22 +02:00
Rike
1de1c2253e Combine output after code review 2022-05-09 16:04:58 +02:00
Nicolas Vannieuwkerke
bd7e1414a4 Fixed meta.yml 2022-05-09 15:55:48 +02:00
nvnieuwk
4b8bd9ebf9
Merge branch 'master' into new-module-rtg/vcfeval 2022-05-09 15:51:31 +02:00
Nicolas Vannieuwkerke
1b63d03f8e adjusted the bed variable name 2022-05-09 15:51:19 +02:00
Mahesh Binzer-Panchal
da93beaf60 Update pytests 2022-05-09 13:50:49 +00:00
Nicolas Vannieuwkerke
f6262b4a10 fixed some issues 2022-05-09 15:47:07 +02:00
Rike
24d5e7feed Code review suggestions 2022-05-09 15:42:55 +02:00
Mahesh Binzer-Panchal
8d86988632
Merge branch 'master' into meryl/histogram 2022-05-09 15:39:32 +02:00
nvnieuwk
d6dd4c2e2d
Update tests/modules/rtgtools/vcfeval/test.yml 
Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de>
 2022-05-09 15:35:16 +02:00
Rike
ef5f145342 Generalize Bam2Cram do either conversion 2022-05-09 15:22:54 +02:00
Annick Renevey
ac3034696b update md5sum 2022-05-09 15:19:16 +02:00
FriederikeHanssen
52a62c238b
Merge branch 'nf-core:master' into master 2022-05-09 15:05:58 +02:00
Mahesh Binzer-Panchal
0c567f5474
Merge branch 'master' into meryl_unionsum 2022-05-09 15:03:27 +02:00
Mahesh Binzer-Panchal
f0f414d519 Update pytests 2022-05-09 13:00:10 +00:00
Jasmin F
6b8e7ea8e3
Merge pull request #1637 from jasmezz/test_data_bacteroides 
Update test_data.config: Add Bacteroides fragilis GFF file
 2022-05-09 14:59:15 +02:00
Mahesh Binzer-Panchal
57fee2b3d6 Add description pattern 2022-05-09 12:56:22 +00:00
Annick Renevey
eed874ace7 update arriba tests 2022-05-09 14:55:59 +02:00
Annick Renevey
bf91f9dd9b update arriba module 2022-05-09 14:55:59 +02:00
Mahesh Binzer-Panchal
6621768550 Update pytest outputs 2022-05-09 12:54:31 +00:00
Jasmin F
453d5b66a4
Add Bacteroides fragilis GFF file 2022-05-09 14:46:18 +02:00
Mahesh Binzer-Panchal
ce97c87b5d
Merge branch 'master' into meryl_unionsum 2022-05-09 13:51:55 +02:00
Harshil Patel
eb084d1dc0
Merge pull request #1626 from mahesh-panchal/meryl_count 
Meryl Count
 2022-05-09 12:21:09 +01:00
Mahesh Binzer-Panchal
7a5d5f5766
Merge branch 'master' into kat_hist 2022-05-09 13:18:18 +02:00
Mahesh Binzer-Panchal
a43bc940d6 Add suggestions from code review 2022-05-09 11:15:14 +00:00
Mahesh Binzer-Panchal
129f57ccd9 Add meryl histogram 2022-05-09 08:50:28 +00:00
Mahesh Binzer-Panchal
ad4f8389cb Add meryl unionsum 2022-05-09 08:33:21 +00:00
Mahesh Binzer-Panchal
32b0fdc9d9
Merge branch 'master' into meryl_count 2022-05-09 10:05:28 +02:00
Mahesh Binzer-Panchal
9ebeb6a702 Update test 2022-05-09 08:05:07 +00:00
Matthias De Smet
3dc18365f6
Merge branch 'master' into new-module-rtg/vcfeval 2022-05-09 10:04:29 +02:00
Lucpen
38d4f81d20
Merge pull request #1623 from nf-core/correcting_stubs 
fix added correct entry workflow in test.yml
 2022-05-09 10:02:56 +02:00
Mahesh Binzer-Panchal
4591ea2205 atomize 2022-05-09 07:58:58 +00:00
Matthias De Smet
2b91985aa0
Merge branch 'master' into new-module-rtg/vcfeval 2022-05-09 09:43:48 +02:00
Nicolas Vannieuwkerke
d18af7358a Moved untarring the genome sdf folder to the test itself 2022-05-09 09:20:42 +02:00
Lucpen
bdaed264a7
Merge branch 'master' into correcting_stubs 2022-05-09 08:54:22 +02:00
James A. Fellows Yates
8a83ad0518
Merge branch 'master' into motus_profile 2022-05-09 08:16:16 +02:00
nvnieuwk
6fd9246aef
Update modules/rtgtools/vcfeval/main.nf 
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
 2022-05-09 08:07:33 +02:00
Maxime U. Garcia
9cfa06878e
Merge pull request #1629 from maxulysse/master_typos 
fix typos and spacing
 2022-05-08 12:23:23 +02:00
JIANHONG OU
b2542ee079 remove the mgc in metadata for motus_profile. 2022-05-08 06:21:26 -04:00
MaxUlysse
3d428e2933 fix spacing 2022-05-07 15:28:40 +02:00
MaxUlysse
1013be2623 fix path to script 2022-05-07 15:22:52 +02:00
Jose Espinosa-Carrasco
2c5ecc87ed
Merge pull request #1628 from nf-core/maxulysse-patch-1 
add missing file
 2022-05-06 23:54:04 +02:00
Jose Espinosa-Carrasco
e2acf28c8f
Merge branch 'master' into maxulysse-patch-1 2022-05-06 23:53:27 +02:00
Harshil Patel
e36489d9e4
Merge pull request #1627 from nf-core/fix-prefetch 
Use a template to add retrying to prefetch
 2022-05-06 19:43:43 +01:00
Harshil Patel
2676f8eef4
Merge branch 'master' into fix-prefetch 2022-05-06 19:33:44 +01:00
Matthias De Smet
b6dd8d2854
Merge pull request #1622 from matthdsm/update/snapaligner 2022-05-06 19:34:09 +02:00