2441 commits

This branch

This branch

All branches

Author	SHA1	Message	Date
Mahesh Binzer-Panchal	57db28386e	Support batch fasta analysis	2022-05-03 13:26:49 +00:00
ljmesi	034352dbbf	Merge branch 'add_compression_to_bam2fq' of https://github.com/Genomic-Medicine-Linkoping/modules into add_compression_to_bam2fq	2022-05-03 15:18:12 +02:00
ljmesi	5510ea39fe	Test --no-name to solve inconsistent checksums	2022-05-03 15:18:09 +02:00
Ramprasad Neethiraj	26311aba2a	fix minor errors	2022-05-03 15:04:37 +02:00
Ramprasad Neethiraj	be085c0173	Merge branch 'master' of https://github.com/nf-core/modules into feat/update_cnvpytor	2022-05-03 14:55:42 +02:00
Ramprasad Neethiraj	19cfb4e951	update meta files	2022-05-03 14:53:56 +02:00
Ramprasad Neethiraj	46e5752b82	update tests	2022-05-03 14:32:45 +02:00
Ramprasad Neethiraj	3efa931bf6	view	2022-05-03 14:26:46 +02:00
Ramprasad Neethiraj	829c15c98b	partition	2022-05-03 14:26:34 +02:00
Ramprasad Neethiraj	7cc47f6ba6	importrd	2022-05-03 14:25:20 +02:00
Ramprasad Neethiraj	07e026054a	histogram	2022-05-03 14:24:54 +02:00
Ramprasad Neethiraj	2990dc8357	callcnv module	2022-05-03 14:20:05 +02:00
Lauri Mesilaakso	a65e76e3dd	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 14:30:54 +03:00
Chris Cheshire	6f35537d40	Merge branch 'master' into expected_error_fix	2022-05-03 12:21:51 +01:00
Chris Cheshire	1baf143607	Merge pull request #1548 from rpetit3/rp3-add-shigatyper ... add module for shigatyper	2022-05-03 12:21:43 +01:00
Chris Cheshire	829183ee84	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:16:54 +01:00
Chris Cheshire	b3ee6384e6	Merge pull request #1604 from nf-core/add-slimfastq ... feat: add module for slimfastq	2022-05-03 12:16:41 +01:00
Chris Cheshire	6015478b72	Merge branch 'master' into add-slimfastq	2022-05-03 12:11:19 +01:00
Chris Cheshire	d7fb969a74	Merge branch 'master' into rp3-add-shigatyper	2022-05-03 12:10:23 +01:00
Chris Cheshire	40e6bd9dc1	bowtie2|fix tags error	2022-05-03 12:07:04 +01:00
Chris Cheshire	0f1ee7e50d	bowtie2|test fixes	2022-05-03 12:04:51 +01:00
Chris Cheshire	61f68913fe	Merge branch 'master' into expected_error_fix	2022-05-03 11:49:35 +01:00
Chris Cheshire	768073be63	bowtie2|Added support for large indexes	2022-05-03 11:46:19 +01:00
Mahesh Binzer-Panchal	012f085378	Prettier	2022-05-03 09:19:39 +00:00
Mahesh Binzer-Panchal	9eff38ff94	Update meta.yml	2022-05-03 09:15:45 +00:00
Mahesh Binzer-Panchal	ddbe6e8f40	Merge branch 'master' into busco	2022-05-03 10:48:03 +02:00
Mahesh Binzer-Panchal	9a72548ee1	Update busco module	2022-05-03 08:42:56 +00:00
Lauri Mesilaakso	6367c6a1ad	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 11:41:25 +03:00
James A. Fellows Yates	b61cdc7355	Merge pull request #1570 from nvnieuwk/vardict-java ... new_module:vardict-java	2022-05-03 10:26:41 +02:00
nvnieuwk	f85787b19e	Merge branch 'master' into vardict-java	2022-05-03 10:17:04 +02:00
nvnieuwk	8187641280	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:45 +02:00
nvnieuwk	11c6faf433	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:36 +02:00
nvnieuwk	01085b3e09	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:30 +02:00
nvnieuwk	1609dfc96d	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:20 +02:00
nvnieuwk	3cdbdf50fc	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:16:14 +02:00
nvnieuwk	2dff193b54	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:59 +02:00
nvnieuwk	7c89af359c	Update modules/vardictjava/meta.yml ... Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>	2022-05-03 10:15:51 +02:00
Nicolas Vannieuwkerke	49ba3adbde	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 10:15:33 +02:00
Nicolas Vannieuwkerke	d33253513f	put the version on top of the file	2022-05-03 10:15:30 +02:00
Lauri Mesilaakso	773e6f8e93	Merge branch 'master' into add_compression_to_bam2fq	2022-05-03 11:13:55 +03:00
Lucpen	3891eca3c3	Merge pull request #1596 from nf-core/adding_stub_to_modules ... feat added stub to modules gatk4_mergebamalignment_mutect2_revertsam_samtofastq, samtools_view	2022-05-03 10:13:25 +02:00
nvnieuwk	278d41b6bf	Merge branch 'master' into vardict-java	2022-05-03 09:59:05 +02:00
ljmesi	59d6e6e1dd	Add updated md5sums	2022-05-03 09:56:50 +02:00
ljmesi	5503903457	Add compression for output fastq file	2022-05-03 09:46:04 +02:00
Ramprasad Neethiraj	6f787aea71	Merge branch 'master' into adding_stub_to_modules	2022-05-03 09:43:16 +02:00
Lauri Mesilaakso	218400b632	Merge pull request #1600 from Genomic-Medicine-Linkoping/add_handling_of_alternative_fn_suffix_for_metaphlan3 ... Add additional handling of fq.gz file name suffix	2022-05-03 09:50:09 +03:00
Lauri Mesilaakso	77054795fb	Merge branch 'master' into add_handling_of_alternative_fn_suffix_for_metaphlan3	2022-05-03 09:38:51 +03:00
Nicolas Vannieuwkerke	71c5d21374	ran prettier	2022-05-03 08:34:12 +02:00
Nicolas Vannieuwkerke	9127f92ddd	Merge branch 'vardict-java' of github.com:nvnieuwk/modules into vardict-java	2022-05-03 08:29:50 +02:00
Nicolas Vannieuwkerke	9a10e5beb5	Added the missing inputs in meta.yml + correct notation	2022-05-03 08:29:46 +02:00