nf-core_modules/modules/samtools/dict/meta.yml
Matthieu Muffato 31409f5e72
Added the samtools/dict module (#1922)
* Added the samtools/dict module

* samtools/dict is single-threaded
2022-07-26 22:13:19 +01:00

41 lines
1.2 KiB
YAML

name: samtools_dict
description: Create a sequence dictionary file from a FASTA file
keywords:
- dict
- fasta
tools:
- samtools:
description: |
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
homepage: http://www.htslib.org/
documentation: http://www.htslib.org/doc/samtools.html
doi: 10.1093/bioinformatics/btp352
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fasta:
type: file
description: FASTA file
pattern: "*.{fa,fasta}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- dict:
type: file
description: FASTA dictionary file
pattern: "*.{dict}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@muffato"