nf-core_modules/modules/samtools/getrg/meta.yml
Matthias De Smet b5aa12ad3b
new module: samtools/getrg (#2123)
* new module: samtools/getrg

* add output file to stub

* add missing config

* Intentionally break prettier linting

* [automated] Fix linting with Prettier

Co-authored-by: Phil Ewels <phil@seqera.io>
Co-authored-by: nf-core-bot <core@nf-co.re>
2022-09-28 14:00:10 +02:00

43 lines
1.2 KiB
YAML

name: samtools_getrg
description: filter/convert SAM/BAM/CRAM file
keywords:
- view
- bam
- sam
- cram
- readgroup
tools:
- samtools:
description: |
SAMtools is a set of utilities for interacting with and post-processing
short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li.
These files are generated as output by short read aligners like BWA.
homepage: http://www.htslib.org/
documentation: hhttp://www.htslib.org/doc/samtools.html
doi: 10.1093/bioinformatics/btp352
licence: ["MIT"]
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- input:
type: file
description: BAM/CRAM/SAM file
pattern: "*.{bam,cram,sam}"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- readgroup:
type: stdout
description: File containing readgroup string(s)
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@matthdsm"