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45985ff6f0
* Updated module to fit nf-core2.2dev0 templates * Updated module to fit nf-core2.2dev0 templates * Linked test files to nf-core/test-dataset branch:raredisease raw files * Change order of input: vcf and tbi with meta, ped without * Change order of input: vcf and tbi with meta, ped without/adapt test * Change order of input: vcf and tbi with meta, ped without/adapt test, bugfix * Indent and rename files * Update modules/peddy/main.nf Removed newline Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/meta.yml Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update modules/peddy/main.nf Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> * Update pytest_modules.yml * Update main.nf * Apply suggestions from code review Co-authored-by: FriederikeHanssen <Friederike.hanssen@qbic.uni-tuebingen.de> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
17 lines
560 B
Text
17 lines
560 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PEDDY } from '../../../modules/peddy/main.nf' addParams( options: [:] )
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workflow test_peddy {
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input = [
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[ id:'test', single_end:false ],
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file(params.test_data['homo_sapiens']['genome']['justhusky_minimal_vcf_gz'], checkIfExists: true),
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file(params.test_data['homo_sapiens']['genome']['justhusky_minimal_vcf_gz_tbi'], checkIfExists: true)
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]
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ped = file(params.test_data['homo_sapiens']['genome']['justhusky_ped'], checkIfExists: true)
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PEDDY ( input , ped )
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}
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