mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-10 20:23:10 +00:00
46 lines
1.1 KiB
Text
46 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SLIMFASTQ } from '../../../modules/slimfastq/main.nf'
|
|
|
|
workflow test_slimfastq_single_end {
|
|
|
|
input = [
|
|
[ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)
|
|
]
|
|
|
|
SLIMFASTQ ( input )
|
|
}
|
|
|
|
workflow test_slimfastq_paired_end {
|
|
|
|
input = [
|
|
[ id:'test', single_end:false ], // meta map
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)]
|
|
]
|
|
|
|
SLIMFASTQ ( input )
|
|
}
|
|
|
|
workflow test_slimfastq_nanopore {
|
|
|
|
input = [
|
|
[ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
|
|
]
|
|
|
|
SLIMFASTQ ( input )
|
|
}
|
|
|
|
workflow test_slimfastq_pacbio {
|
|
|
|
input = [
|
|
[ id:'test', single_end:true ], // meta map
|
|
file(params.test_data['homo_sapiens']['pacbio']['ccs_fq_gz'], checkIfExists: true)
|
|
]
|
|
|
|
SLIMFASTQ ( input )
|
|
}
|