nf-core_modules/tests/software
Alexander Peltzer 0337916f8a
Add YARA module (#353)
* Initial work on yara module

* Adding in index basics

* Updated the index stuff

* Adding in proper tests

* Fix editorconfig

* Odd paths

* that should do it

* Fix tests

* Fix tests

* FFS

* Once more

* Mapping is not deterministic
2021-03-24 17:14:52 +01:00
..
adapterremoval Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
allelecounter Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bandage/image Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bcftools Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bedtools Update bedtools modules with config logic (#369) 2021-03-24 14:14:19 +00:00
bismark Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
blast Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bowtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bowtie2 Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bwa Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bwamem2 Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
bwameth Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
cat/fastq Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
cnvkit Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
cutadapt Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
dsh Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
fastp modify fastp tests (#367) 2021-03-24 17:08:59 +01:00
fastqc Use a config containing all test data for module tests (#365) 2021-03-24 13:07:37 +00:00
flash Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
gatk4 Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
gffread Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
gunzip Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
homer/annotatepeaks Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
ivar Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
kallisto/index Add module kallisto/index (#357) 2021-03-24 12:25:39 +00:00
kraken2/run Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
methyldackel Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
minia Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
minimap2/align Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
mosdepth Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
multiqc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
optitype Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
pangolin Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
picard Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
preseq/lcextrap Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
prodigal Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
prokka Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
qualimap/bamqc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
quast Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
salmon Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
samtools Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
seacr/callpeak Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
seqkit/split2 Seqkit/split2 test path update (#372) 2021-03-24 17:05:43 +01:00
sequenzautils/gcwiggle Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
seqwish/induce Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
shovill Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
spades Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
star Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
strelka/germline Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
stringtie Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
tabix Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
tiddit/sv Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
trimgalore Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
ucsc Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
unicycler Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
untar Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
vcftools Re-organise all test data (#354) 2021-03-24 09:53:41 +00:00
yara Add YARA module (#353) 2021-03-24 17:14:52 +01:00