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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
16 lines
587 B
Text
16 lines
587 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { MOSDEPTH } from '../../../software/mosdepth/main.nf' addParams( options: [:] )
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workflow test_mosdepth {
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input = [ [ id:'test', single_end:true ],
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[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true) ],
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[ file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam.bai", checkIfExists: true) ]
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]
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dummy = file("dummy_file.txt")
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window = 100
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MOSDEPTH ( input, dummy, window )
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}
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