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https://github.com/MillironX/nf-core_modules.git
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acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
25 lines
898 B
Text
25 lines
898 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { QUAST } from '../../../software/quast/main.nf' addParams(options: [:])
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workflow test_quast_ref {
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fasta = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
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gff = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.gtf", checkIfExists: true)
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consensus = file("${launchDir}/tests/data/genomics/sarscov2/genome/transcriptome.fasta", checkIfExists: true)
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use_fasta = true
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use_gtf = true
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QUAST ( consensus, fasta, gff, use_fasta, use_gtf )
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}
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workflow test_quast_noref {
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fasta = file('fasta_dummy')
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gff = file('gff_dummy')
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consensus = file("${launchDir}/tests/data/genomics/sarscov2/genome/genome.fasta", checkIfExists: true)
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use_fasta = false
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use_gtf = false
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QUAST ( consensus, fasta, gff, use_fasta, use_gtf )
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}
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