mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 05:43:08 +00:00
acb1a12a56
* Re-organise all test data * Fix ECLint * Fix ECLint agaaainn * Now is not the time EClint
14 lines
551 B
Text
14 lines
551 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SAMTOOLS_STATS } from '../../../../software/samtools/stats/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_samtools_stats {
|
|
input = [ [ id:'test', single_end:false ], // meta map
|
|
file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam", checkIfExists: true),
|
|
file("${launchDir}/tests/data/genomics/sarscov2/illumina/bam/test_paired_end.sorted.bam.bai", checkIfExists: true)
|
|
]
|
|
|
|
SAMTOOLS_STATS ( input )
|
|
}
|