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https://github.com/MillironX/nf-core_modules.git
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f5d5926516
* Match target bed to input files * Intervals in getpileupsumamries * more interval updates * change targets in strelka * remove leftover channel * fix checksums * add new test vcfs * add new test vcfs * Update modules/freebayes/main.nf Co-authored-by: Maxime U. Garcia <maxime.garcia@scilifelab.se>
32 lines
1.4 KiB
YAML
32 lines
1.4 KiB
YAML
- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_just_variants
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command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_just_variants -c tests/config/nextflow.config
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tags:
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- gatk4/getpileupsummaries
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- gatk4
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files:
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- path: output/gatk4/test.pileups.table
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md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
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- path: output/gatk4/versions.yml
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md5sum: dd98374e3b5d35ddd1c6b3fa7e662dc5
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- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites
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command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites -c tests/config/nextflow.config
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tags:
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- gatk4/getpileupsummaries
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- gatk4
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files:
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- path: output/gatk4/test.pileups.table
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md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
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- path: output/gatk4/versions.yml
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md5sum: 080b6af7df182558aeab117668388d59
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- name: gatk4 getpileupsummaries test_gatk4_getpileupsummaries_separate_sites_cram
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command: nextflow run tests/modules/gatk4/getpileupsummaries -entry test_gatk4_getpileupsummaries_separate_sites_cram -c tests/config/nextflow.config
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tags:
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- gatk4/getpileupsummaries
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- gatk4
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files:
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- path: output/gatk4/test.pileups.table
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md5sum: 8e0ca6f66e112bd2f7ec1d31a2d62469
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- path: output/gatk4/versions.yml
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md5sum: 33458a9efa6d61c713af9f7b722d7134
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