mirror of
https://github.com/MillironX/nf-core_modules.git
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50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
27 lines
1.2 KiB
YAML
27 lines
1.2 KiB
YAML
- name: gatk4 markduplicates test_gatk4_markduplicates
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command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicates
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files:
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- path: output/gatk4/test.bai
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md5sum: e9c125e82553209933883b4fe2b8d7c2
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- path: output/gatk4/test.bam
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md5sum: 1c6b1372121eddccd086456aa1c174bf
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- path: output/gatk4/test.metrics
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- path: output/gatk4/versions.yml
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md5sum: 0e46677bdf1e5df892578cec6bc26dba
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- name: gatk4 markduplicates test_gatk4_markduplicates_multiple_bams
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command: nextflow run tests/modules/gatk4/markduplicates -entry test_gatk4_markduplicates_multiple_bams -c tests/config/nextflow.config -c ./tests/modules/gatk4/markduplicates/nextflow.config
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tags:
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- gatk4
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- gatk4/markduplicates
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files:
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- path: output/gatk4/test.bai
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md5sum: bad71df9c876e72a5bc0a3e0fd755f92
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- path: output/gatk4/test.bam
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md5sum: d1b85fb578a97f05b484c0d241a9aaad
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- path: output/gatk4/test.metrics
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- path: output/gatk4/versions.yml
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md5sum: 6844dc08e677455205e2270ac291c951
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