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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
42 lines
1 KiB
YAML
42 lines
1 KiB
YAML
name: genmap_mappability
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description: create mappability file for a genome
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keywords:
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- mappability
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tools:
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- genmap:
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description: Ultra-fast computation of genome mappability.
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homepage: https://github.com/cpockrandt/genmap
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documentation: https://github.com/cpockrandt/genmap
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tool_dev_url: https://github.com/cpockrandt/genmap
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doi: "10.1093/bioinformatics/btaa222"
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licence: ['BSD']
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input:
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- fasta:
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type: file
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description: fasta file
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pattern: "*.{fasta,fa}"
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- index:
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type: file
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description: index file
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- wig:
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type: file
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description: genmap wig mappability file
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pattern: "*.wig"
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- bedgraph:
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type: file
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description: genmap bedgraph mappability file
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pattern: "*.bedgraph"
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- txt:
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type: file
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description: genmap text mappability file
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pattern: "*.txt"
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authors:
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- "@jianhong"
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