mirror of
https://github.com/MillironX/nf-core_modules.git
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64 lines
2.8 KiB
YAML
64 lines
2.8 KiB
YAML
- name: Run bowtie index
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_index -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_index
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files:
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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md5sum: f3c398bba5158f4039334a932d79c051
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- name: Run bowtie index and align single-end
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_single_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_align
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files:
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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md5sum: f3c398bba5158f4039334a932d79c051
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- path: output/bowtie/test.out
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md5sum: a81cb18024616415a6cec3108a36fccd
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- path: output/bowtie/test.bam
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md5sum: 8179c68a819accbc9137dc881736106f
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- name: Run bowtie index and align paired-end
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command: nextflow run ./tests/software/bowtie -profile docker -entry test_bowtie_alignment_paired_end -c tests/config/nextflow.config
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tags:
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- bowtie
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- bowtie_align
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files:
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- path: output/bowtie/bowtie/NC_010473.index.1.ebwt
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md5sum: 90f0b7aa5bbaeaaa999839ac13ad203c
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- path: output/bowtie/bowtie/NC_010473.index.2.ebwt
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md5sum: bfd10c5319c6a0dbc540fd789254a5dd
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- path: output/bowtie/bowtie/NC_010473.index.3.ebwt
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md5sum: cd201e81724f3099131aec16ef2cc53b
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- path: output/bowtie/bowtie/NC_010473.index.4.ebwt
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md5sum: bbb9d6d21ad765d135f95290204e8433
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- path: output/bowtie/bowtie/NC_010473.index.rev.1.ebwt
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md5sum: 44f719c2fe42e1f35d54e798775846d1
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- path: output/bowtie/bowtie/NC_010473.index.rev.2.ebwt
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md5sum: f3c398bba5158f4039334a932d79c051
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- path: output/bowtie/test.out
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md5sum: a23e9a2a76e949aeb3693bcfae41a615
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- path: output/bowtie/test.bam
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md5sum: 9ce5aebf37128f4bb1d24e9548e22009
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