..
abacas
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
abricate
add module for abricate ( #1280 )
2022-02-18 18:00:21 -07:00
adapterremoval
Refactor adapterremoval ( #1491 )
2022-04-04 21:40:35 +02:00
adapterremovalfixprefix
Add AdapterRemovalFixPrefix ( #1424 )
2022-03-21 11:26:12 +01:00
agrvate
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
allelecounter
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
amps
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
amrfinderplus
add amrfinderplus module ( #1284 )
2022-02-19 23:02:23 +00:00
arriba
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
artic
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
ascat
round the < to ( to make markdown work for meta.yml ( #1395 )
2022-03-16 13:29:11 +01:00
assemblyscan
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
ataqv /ataqv
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
bakta
update bakta to latest version (v1.4.0) ( #1428 )
2022-03-24 10:49:17 -06:00
bamaligncleaner
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
bamcmp
bamcmp ( #1244 )
2022-02-02 16:38:41 +00:00
bamtools
New module: bamtools/convert ( #1219 )
2022-01-28 09:58:25 +00:00
bamutil /trimbam
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
bandage /image
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
bbmap
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
bcftools
bcftools/annotate follow up corrections ( #1359 )
2022-02-28 10:16:29 -05:00
bedtools
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
biobambam
New tool: biobambam/bamsormadup ( #1478 )
2022-04-06 08:18:23 +02:00
biscuit
Add core Biscuit tools ( #1354 )
2022-03-14 09:34:22 -04:00
bismark
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
blast
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
bowtie
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
bowtie2
Bump software versions for viralrecon modules ( #1198 )
2022-01-07 17:52:39 +00:00
bracken /bracken
Add bracken ( #1423 )
2022-03-22 16:40:21 +01:00
bwa
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
bwamem2
Add new boolean sort_bam as input to be able to chose between sort and view in bwamem and bwamem2mem ( #1125 )
2021-12-08 14:31:27 +00:00
bwameth
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
cat
Update cat module ( #1469 )
2022-03-31 13:42:44 +02:00
cellranger
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
centrifuge /centrifuge
Update centrifuge/centrifuge ( #1495 )
2022-04-07 11:46:34 +02:00
checkm /lineagewf
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
chromap
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
clonalframeml
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
cmseq /polymut
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
cnvkit /batch
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
cnvpytor
Add stubs to cnvpytor module ( #1473 )
2022-04-01 17:35:15 +02:00
controlfreec
Fix Controlfreec: Add stub runs to test single sample input & make conda work with R scripts ( #1504 )
2022-04-08 11:43:40 +02:00
cooler
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
csvtk
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
custom
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
cutadapt
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
damageprofiler
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
dastool
Update DASTool to 1.1.4 ( #1471 )
2022-04-01 11:33:07 +02:00
dedup
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
deeparg
Deeparg singularity container fix 2 ( #1406 )
2022-03-18 16:21:55 +01:00
deeptools
Add deeptools bamcoverage ( #1316 )
2022-02-18 09:35:41 +01:00
deepvariant
Update version & add intervals usage ( #1214 )
2022-01-17 16:40:31 +01:00
delly /call
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
diamond
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dragmap
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
dragonflye
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
dshbio
Update dsh-bio to version 2.0.7, add support for compressed GFA 1.0 format ( #1207 )
2022-01-17 09:24:40 +00:00
ectyper
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
emmtyper
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
ensemblvep
greatly simplify syntax ( #1121 )
2021-12-07 11:18:12 +01:00
expansionhunter
add stub to modules used in raredisease pipeline ( #1206 )
2022-03-28 17:48:39 +02:00
faqcs
Faqcs patch to add tests for --debug output ( #1368 )
2022-03-02 08:53:05 -05:00
fargene
takes gunzip out of fargene main.nf ( #1090 )
2021-11-29 14:32:23 +01:00
fastani
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
fastp
Bump software versions for viralrecon modules ( #1198 )
2022-01-07 17:52:39 +00:00
fastqc
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
fastqscan
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
fasttree
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
fgbio
Added UMI sub-workflow ( #1098 )
2021-12-09 11:16:40 +01:00
filtlong
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
flash
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
freebayes
Update intervals ( #1278 )
2022-02-10 10:34:22 +01:00
gatk4
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
genmap
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
genrich
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
gffread
Replace remaining task.ext.suffix with task.ext.prefix ( #1117 )
2021-12-07 15:00:43 +01:00
glnexus
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
graphmap2
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
gstama
New Module: gstama/polyacleanup ( #1468 )
2022-03-31 09:11:51 -04:00
gtdbtk /classifywf
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
gubbins
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
gunc
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
gunzip
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
hamronization
Add hamronization/summarize ( #1366 )
2022-03-03 08:02:04 +01:00
hicap
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
hifiasm
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
hisat2
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
hmmcopy
hmmcopy/mapCounter ( #1175 )
2021-12-17 15:39:50 +00:00
hmmer
Prettier ( #1405 )
2022-03-18 14:27:50 +01:00
homer
Fix homer/maketagdirectory output collision ( #1456 )
2022-03-27 03:17:42 +00:00
hpsuissero
add module for hpsuisero ( #1331 )
2022-02-27 17:58:35 -07:00
ichorcna
Prettier ( #1405 )
2022-03-18 14:27:50 +01:00
idr
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
imputeme /vcftoprs
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
iqtree
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ismapper
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
isoseq3
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ivar
Patch fix artic/minion and ivar/variants modules ( #1326 )
2022-02-18 17:36:09 +00:00
jupyternotebook
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
kaiju /kaiju
Add kaiju_kaiju module ( #1448 )
2022-03-28 14:28:50 +02:00
kallisto /index
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
kallistobustools
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
khmer /normalizebymedian
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
kleborate
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
kraken2 /kraken2
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
krona
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
last
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
leehom
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
legsta
add module for legsta ( #1319 )
2022-02-18 17:42:18 -07:00
lima
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
lissero
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
lofreq
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
macrel /contigs
Add new module macrel/contigs ( #1109 )
2021-12-09 13:17:50 +01:00
macs2 /callpeak
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
mafft
Add MAFFT module ( #1351 )
2022-02-28 00:40:24 -07:00
malt
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
maltextract
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
manta
Revert manta changes ( #1518 )
2022-04-12 10:40:06 +02:00
mapdamage2
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
mash
add module for mash dist ( #1193 )
2022-01-04 17:29:49 +01:00
mashtree
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
maxbin2
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
medaka
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
megahit
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
megan /rma2info
Add MEGAN/RMA2INFO ( #1513 )
2022-04-12 08:35:36 +02:00
meningotype
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
metabat2
Update metabat2 output channels and compression ( #1111 )
2021-12-09 15:00:32 +01:00
metaphlan3
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
methyldackel
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
minia
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
miniasm
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
minimap2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
mlst
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
mobsuite /recon
add mobsuite_recon module ( #1270 )
2022-02-18 17:52:38 -07:00
mosdepth
Update mosdepth ( #1256 )
2022-02-09 12:45:55 +00:00
msisensor
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
msisensorpro
Add msisensorpro ( #1267 )
2022-02-09 21:05:49 +01:00
mtnucratio
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
multiqc
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
mummer
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
muscle
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
nanolyse
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
nanoplot
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
ncbigenomedownload
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
nextclade
Bump Nextclade version to 1.10.1 ( #1236 )
2022-01-27 12:53:14 +00:00
ngmaster
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
ngscheckmate /ncm
New module: NGSCheckMate ( #1290 )
2022-03-11 09:02:10 +00:00
nucmer
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
optitype
Add BAM indexes as input for optitype module. ( #1388 )
2022-03-15 17:02:40 +01:00
pairix
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
pairtools
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
panaroo /run
add module for panaroo, fix pirate tests ( #1444 )
2022-03-24 20:11:04 -06:00
pangolin
Bump Pangolin version to 3.1.20 ( #1296 )
2022-02-15 10:46:20 +00:00
paraclu
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
pbbam /pbmerge
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
pbccs
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
peddy
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
phantompeakqualtools
Add task.ext.args to phantompeakqualtools and finish the module ( #1474 )
2022-03-31 22:59:21 +01:00
phyloflash
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
picard
Tool/crosscheckfingerprints ( #1505 )
2022-04-08 10:02:10 -04:00
pirate
add module for panaroo, fix pirate tests ( #1444 )
2022-03-24 20:11:04 -06:00
plasmidid
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
plink
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
plink2
implement plink2/score module ( #1259 )
2022-03-07 13:02:40 -05:00
pmdtools /filter
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
porechop
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
preseq
Split preseq lcextrap and ccurve ( #1440 )
2022-03-25 17:11:40 +00:00
prinseqplusplus
Add PRINSEQPLUSPLUS ( #1481 )
2022-04-03 16:06:22 +02:00
prodigal
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
prokka
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
pycoqc
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
pydamage
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
qcat
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
qualimap
add qualimap with cram files + remove val from qualimap/bam, instead use empty list as everywhere else ( #1320 )
2022-02-18 09:43:53 +01:00
quast
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
racon
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
rapidnj
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
rasusa
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
raven
Raven assembler ( #1087 )
2022-02-01 11:47:01 +01:00
raxmlng
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
rgi /main
add module for rgi ( #1321 )
2022-02-18 17:23:44 -07:00
rmarkdownnotebook
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
roary
Update test.yml ( #1419 )
2022-03-19 15:06:21 +00:00
rsem
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
rseqc
Provide BAI when running rseqc/tin ( #1177 )
2021-12-17 10:00:09 +00:00
salmon
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
samblaster
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
samtools
Samtools version update ( #1507 )
2022-04-11 14:26:28 +02:00
scoary
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
seacr /callpeak
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqkit
feat: add module for seqkit stats ( #1466 )
2022-03-30 23:01:17 +02:00
seqsero2
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
seqtk
Decrease indent in seqtk/seq versions.yml output ( #1384 )
2022-03-09 11:56:35 -05:00
sequenzautils
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
seqwish /induce
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
shovill
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
sistr
add module for sistr ( #1323 )
2022-02-18 17:33:48 -07:00
snapaligner
Tool/snap aligner paired ( #1509 )
2022-04-12 11:02:10 +02:00
snpdists
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
snpeff
greatly simplify syntax ( #1121 )
2021-12-07 11:18:12 +01:00
snpsift /split
Added new module snpsift/split ( #1031 )
2021-12-17 09:08:14 +01:00
snpsites
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
sourmash /sketch
feat: add sourmash sketch ( #1287 )
2022-02-15 12:30:28 +01:00
spades
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
spatyper
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
sratools
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
ssuissero
add module for ssuisero ( #1329 )
2022-02-27 20:04:03 -07:00
stadeniolib /scramble
new tool: staden_io_lib ( #1499 )
2022-04-08 09:54:15 -04:00
staphopiasccmec
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
star
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
stranger
Add stranger ( #1360 )
2022-03-01 14:29:46 +01:00
strelka
Update intervals ( #1278 )
2022-02-10 10:34:22 +01:00
stringtie
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
subread /featurecounts
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
svdb
update svdb to version 2.5.2 ( #1390 )
2022-03-21 10:39:34 +01:00
tabix
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
tbprofiler /profile
Fix formatting in yaml files, add yamllint config ( #1279 )
2022-02-15 11:15:27 +00:00
tiddit
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
transdecoder
Transdecoder predict ( #1251 )
2022-02-02 09:46:07 +01:00
trimgalore
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
ucsc
ucsc/wigtobigwig: add meta map ( #1199 )
2022-01-11 21:31:37 +00:00
ultra /pipeline
Change syntax from task.ext.suffix to tast.ext.prefix in all modules ( #1110 )
2021-12-02 12:39:55 +00:00
umitools
Add tests for umitools extract and dedup ( #1429 )
2022-03-25 14:25:07 +00:00
unicycler
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
untar
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
unzip
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
variantbam
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
vcfanno
Untar unzip meta ( #1408 )
2022-03-21 14:49:28 +01:00
vcflib /vcfuniq
Add new vcflib/vcfuniq module ( #1208 )
2022-01-14 18:18:11 +00:00
vcftools
Update all modules to new NF DSL2 syntax ( #1099 )
2021-11-26 07:58:40 +00:00
yara
Add samtools index to yara_mapper module ( #1353 )
2022-03-04 10:08:02 -05:00
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