nf-core_modules/tests/modules/hamronization/fargene/test.yml
James A. Fellows Yates daab0a77dd
Add HAMRONIZATION/FARGENE and updates all HARMONIZATION tools to 1.1.1 (#2107)
* Update main.nf

* Update meta.yml

* Re-add logos as not staged in a way that works with MultiQC config files

* Update main.nf

* Remove now unnecessary input channel

* Remove unused channel from tests

* Update hAMRonization to 1.1.1 and add hAMRonization farGene

* Fix hamronizatio ntests

* Prettier

* Fix fargene linting

* Correct file

* Fix fargene output

* Apply suggestions from code review

Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>

* Fix summarise tests

* Prettier

Co-authored-by: Jasmin F <73216762+jasmezz@users.noreply.github.com>
2022-09-27 15:32:18 +02:00

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YAML

- name: hamronization fargene test_hamronization_fargene
command: nextflow run ./tests/modules/hamronization/fargene -entry test_hamronization_fargene -c ./tests/config/nextflow.config -c ./tests/modules/hamronization/fargene/nextflow.config
tags:
- hamronization
- hamronization/fargene
files:
- path: output/hamronization/test.tsv