.. |
abacas
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
adapterremoval
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
allelecounter
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
arriba
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Added module arriba (#611)
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2021-07-22 15:19:42 +01:00 |
artic
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bandage/image
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bbmap
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Bbmap index (#683)
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2021-09-03 09:28:28 +02:00 |
bcftools
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Add bcftools/norm module (#655)
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2021-08-16 17:40:03 +02:00 |
bedtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bismark
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
blast
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
bowtie
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bowtie2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bwa
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module: bwa/sampe (#625)
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2021-08-02 15:37:48 +02:00 |
bwamem2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
bwameth
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
cat/fastq
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
cnvkit
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
cooler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
cutadapt
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
damageprofiler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
deeptools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
delly/call
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
dragonflye
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add module for dragonflye (#633)
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2021-08-16 11:51:30 +02:00 |
dshbio
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Add dsh-bio export-segments module (#631)
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2021-08-17 15:53:41 +02:00 |
ensemblvep
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
expansionhunter
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Expansionhunter (#666)
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2021-08-16 17:47:42 +02:00 |
fastp
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enhance module fastp: add save_merged (#598) (#614)
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2021-07-23 10:44:00 +01:00 |
fastqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
fasttree
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
fgbio
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
flash
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
gatk4
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fix: update to gatk4.2.0.0 (#575)
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2021-07-16 11:26:28 +02:00 |
genmap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
gffread
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
graphmap2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
gubbins
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
gunzip
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
hifiasm
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Add hifiasm module (#596)
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2021-07-20 21:50:22 +01:00 |
hisat2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
hmmer/hmmalign
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
homer/annotatepeaks
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
iqtree
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
ivar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
kallisto/index
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
kallistobustools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
kraken2/kraken2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
last
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
lofreq
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fix: lofreq/callparallel missing arg (#562) (#586)
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2021-07-19 09:19:27 +01:00 |
malt
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Update test.yml (#668)
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2021-08-17 15:08:21 +02:00 |
mash/sketch
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
metaphlan3
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
methyldackel
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
minia
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
minimap2
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
mosdepth
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
msisensor
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
multiqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
muscle
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nanolyse
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nanoplot
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
nextclade
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Update Nextclade to output all files by default (#638)
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2021-07-28 19:49:50 +01:00 |
optitype
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pairix
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pairtools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pangolin
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Bump Pangolin to 3.1.7 (#593)
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2021-07-20 12:25:36 +01:00 |
picard
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
plasmidid
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
preseq/lcextrap
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
prodigal
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
prokka
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
pycoqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
qcat
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
qualimap/bamqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
quast
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rapidnj
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rasusa
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
raxmlng
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rsem
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
rseqc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
salmon
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
samtools
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
seacr/callpeak
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
seqkit/split2
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
seqtk
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
sequenzautils
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
seqwish/induce
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
shovill
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
snpeff
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
snpsites
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
spades
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
star
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Added PL tag in read group information for downstream analysis (#649)
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2021-08-04 11:16:51 +02:00 |
strelka/germline
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
stringtie
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Add option -p to set the # of cpus on stringtie (#601)
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2021-07-21 15:38:40 +02:00 |
subread/featurecounts
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
tabix
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nf-core modules bump-versions for all modules (#630)
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2021-07-28 09:10:44 +01:00 |
tiddit/sv
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
trimgalore
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
ucsc
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
unicycler
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
untar
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
unzip
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module: unzip (#642)
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2021-08-02 09:40:57 +02:00 |
variantbam
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Add variantbam (#618)
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2021-07-26 19:07:29 +01:00 |
vcftools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
yara
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |