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02218ab5a0
* hmmcopy/mapCounter * update test * Remove bam tag * Remove /tmp/ path from test.yml * Update modules/hmmcopy/mapcounter/meta.yml Incorporate formatting changes Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/hmmcopy/mapcounter/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update tests/modules/hmmcopy/mapcounter/main.nf Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Simon Pearce <simon.pearce@cruk.manchester.ac.uk> Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>
34 lines
1 KiB
YAML
34 lines
1 KiB
YAML
name: hmmcopy_mapcounter
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description: mapCounter function from HMMcopy utilities, used to generate mappability in non-overlapping windows from a bigwig file
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keywords:
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- hmmcopy
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- mapcounter
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- cnv
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tools:
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- hmmcopy:
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description: C++ based programs for analyzing BAM files and preparing read counts -- used with bioconductor-hmmcopy
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homepage: https://github.com/shahcompbio/hmmcopy_utils
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documentation: https://github.com/shahcompbio/hmmcopy_utils
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tool_dev_url: https://github.com/shahcompbio/hmmcopy_utils
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doi: ""
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licence: ['GPL v3']
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input:
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- bigwig:
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type: file
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description: BigWig file with the mappability score of the genome, for instance made with generateMap function.
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pattern: "*.wig"
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output:
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- wig:
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type: file
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description: wig file containing mappability of each window of the genome
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pattern: "*.map.wig"
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authors:
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- "@sppearce"
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