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https://github.com/MillironX/nf-core_modules.git
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19035c99d1
* add thread option to samtools modules * fix tests * fix tests * fix tests * Fix naming to fix tests * cpus-1 to account for mainthread * remove thread in ampliconclip, docu doesn't report this param * add -1 to all other applicable samtools modules * Update samtools version * Update checksums * retrigger GHA after update * Update modules/samtools/fastq/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/flagstat/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/index/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/merge/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/stats/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/view/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Fix md5sum fixmate * Fix md5sums * sth funny with the fixmate checksums * more md5sums updates Co-authored-by: Patrick Hüther <patrick.huether@gmail.com>
34 lines
1.4 KiB
YAML
34 lines
1.4 KiB
YAML
## TODO nf-core: Please run the following command to build this file:
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# nf-core modules create-test-yml samtools/ampliconclip
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- name: samtools ampliconclip no stats no rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_no_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: 678f9ab04fbe3206f0f96e170fd833e9
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- name: samtools ampliconclip no stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_no_stats_with_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: bbf65ea626539d96c8271e17d1fc988b
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- path: output/samtools/test.cliprejects.bam
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md5sum: a0bee15aead020d16d0c81bd9667df46
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- name: samtools ampliconclip with stats with rejects
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command: nextflow run ./tests/modules/samtools/ampliconclip -entry test_samtools_ampliconclip_with_stats_with_rejects -c tests/config/nextflow.config
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tags:
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- samtools
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- samtools/ampliconclip
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files:
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- path: output/samtools/test.bam
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md5sum: f5a3611ecad34ba2dde77096e1c7dd93
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- path: output/samtools/test.cliprejects.bam
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md5sum: 90ee7ce908b4bdb89ab41e4410de9012
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- path: output/samtools/test.clipstats.txt
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md5sum: fc23355e1743d47f2541f2cb1a7a0cda
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