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https://github.com/MillironX/nf-core_modules.git
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19035c99d1
* add thread option to samtools modules * fix tests * fix tests * fix tests * Fix naming to fix tests * cpus-1 to account for mainthread * remove thread in ampliconclip, docu doesn't report this param * add -1 to all other applicable samtools modules * Update samtools version * Update checksums * retrigger GHA after update * Update modules/samtools/fastq/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/fixmate/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/flagstat/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/index/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/merge/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/stats/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Update modules/samtools/view/main.nf Co-authored-by: Patrick Hüther <patrick.huether@gmail.com> * Fix md5sum fixmate * Fix md5sums * sth funny with the fixmate checksums * more md5sums updates Co-authored-by: Patrick Hüther <patrick.huether@gmail.com>
17 lines
657 B
YAML
17 lines
657 B
YAML
- name: samtools stats test_samtools_stats
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command: nextflow run tests/modules/samtools/stats -entry test_samtools_stats -c tests/config/nextflow.config
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tags:
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- samtools/stats
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- samtools
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files:
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- path: output/samtools/test.paired_end.sorted.bam.stats
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md5sum: 09146eeecfcae2a84fb8615c86cd8d64
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- name: samtools stats test_samtools_stats_cram
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command: nextflow run tests/modules/samtools/stats -entry test_samtools_stats_cram -c tests/config/nextflow.config
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tags:
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- samtools/stats
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- samtools
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files:
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- path: output/samtools/test.paired_end.recalibrated.sorted.cram.stats
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md5sum: 62377b29c3f6253e37308a28d13a496d
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