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1a4c7cec1b
* New modules added: issues #200 and #310 * Update main.nf * Update meta.yml * Update tests/modules/gatk4/genotypegvcfs/main.nf * Apply suggestions from code review * Update main.nf * Updating tests for GenomicsDB input and adding the path for this test resource to test_data.config * Some minor changes on one of the test files I forgot to include Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com> Co-authored-by: GCJMackenzie <43276267+GCJMackenzie@users.noreply.github.com>
42 lines
1.1 KiB
YAML
42 lines
1.1 KiB
YAML
name: gatk4_indexfeaturefile
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description: Creates an index for a feature file, e.g. VCF or BED file.
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keywords:
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- index
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- feature
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tools:
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- gatk4:
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description: Genome Analysis Toolkit (GATK4)
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homepage: https://gatk.broadinstitute.org/hc/en-us
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documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
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tool_dev_url: https://github.com/broadinstitute/gatk
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doi: "10.1158/1538-7445.AM2017-3590"
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licence: ['BSD-3-clause']
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- feature_file:
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type: file
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description: VCF/BED file
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pattern: "*.{vcf,vcf.gz,bed,bed.gz}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- index:
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type: file
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description: Index for VCF/BED file
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pattern: "*.{tbi,idx}"
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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authors:
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- "@santiagorevale"
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