mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-09-21 15:52:05 +00:00
12 lines
440 B
Text
12 lines
440 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { VSEARCH_USEARCHGLOBAL } from '../../../../modules/vsearch/usearchglobal/main.nf'
|
|
|
|
workflow test_vsearch_usearchglobal {
|
|
|
|
query = file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true)
|
|
db = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
VSEARCH_USEARCHGLOBAL ( query, db, "blast6out_results" )
|
|
}
|