nf-core_modules/modules/kleborate/meta.yml

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YAML

name: kleborate
description: Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC).
keywords:
- screening assemblies
- Klebsiella pneumoniae
tools:
- kleborate:
description: Screening Klebsiella genome assemblies for MLST, sub-species, and other Klebsiella related genes of interest
homepage: https://github.com/katholt/Kleborate
documentation: https://github.com/katholt/Kleborate/wiki
tool_dev_url: https://github.com/katholt/Kleborate
doi: 10.1038/s41467-021-24448-3
licence: ['GPL v3 or later (GPL v3+)']
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- fastas:
type: files
description: Klebsiella genome assemblies to be screened
pattern: "*.fasta"
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
- txt:
type: file
description: Result file generated after screening
pattern: "*.txt"
authors:
- "@abhi18av"
- "@rpetit3"