nf-core_modules/software/bwa/index/meta.yml
2020-10-15 11:13:54 +01:00

47 lines
1.4 KiB
YAML

name: bwa_index
description: Create BWA index for reference genome
keywords:
- index
- fasta
- genome
- reference
tools:
- bwa:
description: |
BWA is a software package for mapping DNA sequences against
a large reference genome, such as the human genome.
homepage: http://bio-bwa.sourceforge.net/
documentation: http://www.htslib.org/doc/samtools.html
arxiv: arXiv:1303.3997
params:
- outdir:
type: string
description: |
The pipeline's output directory. By default, the module will
output files into `$params.outdir/<SOFTWARE>`
- publish_dir_mode:
type: string
description: |
Value for the Nextflow `publishDir` mode parameter.
Available: symlink, rellink, link, copy, copyNoFollow, move.
- enable_conda:
type: boolean
description: |
Run the module with Conda using the software specified
via the `conda` directive
input:
- fasta:
type: file
description: Input genome fasta file
output:
- index:
type: file
description: BWA genome index files
pattern: "*.{amb,ann,bwt,pac,sa}"
- version:
type: file
description: File containing software version
pattern: "*.{version.txt}"
authors:
- "@drpatelh"
- "@maxulysse"