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ee46c19d03
* add Picard FastqToSam * Update test.yml * update tests * possible fix? * fixed! * Update modules/picard/fastqtosam/main.nf Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * Update modules/picard/fastqtosam/main.nf Co-authored-by: Moritz E. Beber <midnighter@posteo.net> * simplify tests * fix tests * revert version check Co-authored-by: CMGG ICT Team <ict@cmgg.be> Co-authored-by: Moritz E. Beber <midnighter@posteo.net>
26 lines
1.1 KiB
YAML
26 lines
1.1 KiB
YAML
- name: picard fastqtosam test_picard_fastqtosam_single
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command: nextflow run ./tests/modules/picard/fastqtosam -entry test_picard_fastqtosam_single -c ./tests/config/nextflow.config -c ./tests/modules/picard/fastqtosam/nextflow.config
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tags:
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- picard
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- picard/fastqtosam
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files:
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- path: output/picard/test.bam
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md5sum: fe2882efe8f13a8da20fcc63469ed0aa
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- name: picard fastqtosam test_picard_fastqtosam_paired
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command: nextflow run ./tests/modules/picard/fastqtosam -entry test_picard_fastqtosam_paired -c ./tests/config/nextflow.config -c ./tests/modules/picard/fastqtosam/nextflow.config
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tags:
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- picard
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- picard/fastqtosam
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files:
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- path: output/picard/test.bam
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md5sum: 90e4f59f9d942f96c3f3c41160f3fd5d
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- name: picard fastqtosam test_picard_fastqtosam_paired_custom_samplename
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command: nextflow run ./tests/modules/picard/fastqtosam -entry test_picard_fastqtosam_paired_custom_samplename -c ./tests/config/nextflow.config -c ./tests/modules/picard/fastqtosam/nextflow.config
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tags:
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- picard
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- picard/fastqtosam
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files:
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- path: output/picard/test.bam
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md5sum: 69d35ee2b5dc263d022eaf59a9e383d3
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