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50 lines
1.3 KiB
YAML
50 lines
1.3 KiB
YAML
name: "kaiju_kaiju2table"
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description: write your description here
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keywords:
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- classify
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- metagenomics
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tools:
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- kaiju:
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description: Fast and sensitive taxonomic classification for metagenomics
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homepage: https://kaiju.binf.ku.dk/
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documentation: https://github.com/bioinformatics-centre/kaiju/blob/master/README.md
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tool_dev_url: https://github.com/bioinformatics-centre/kaiju
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doi: "10.1038/ncomms11257"
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licence: ["GNU GPL v3"]
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- results:
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type: file
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description: File containing the kaiju classification results
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pattern: "*.{txt}"
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- taxon_rank:
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type: string
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description: |
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Taxonomic rank to display in report
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pattern: "phylum|class|order|family|genus|species"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- results:
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type: file
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description: |
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Summary table for a given taxonomic rank
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pattern: "*.{tsv}"
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authors:
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- "@sofstam"
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- "@talnor"
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- "@jfy133"
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