nf-core_modules/modules/gatk4/calculatecontamination
GCJMackenzie aa32a8a72e
new module: gatk4/calculatecontamination (#778)
* initiated files for calculate contamination

* pushing local repo to remote

* created script, filled in meta yml, created tests and test yml. local checks passing, needs repo side test data

* added option and tests for outputting optional segmentation file

* saving for test push

* versions updated, test data added

* Update main.nf

* fixed versions info, should report correctly now

* small update to main.nf outputs formatting

* Apply suggestions from code review

* Update test_data.config

* Apply suggestions from code review

Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org>
Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-10-05 22:52:00 +01:00
..
functions.nf new module: gatk4/calculatecontamination (#778) 2021-10-05 22:52:00 +01:00
main.nf new module: gatk4/calculatecontamination (#778) 2021-10-05 22:52:00 +01:00
meta.yml new module: gatk4/calculatecontamination (#778) 2021-10-05 22:52:00 +01:00