nf-core_modules/modules/gatk4/variantfiltration/meta.yml

47 lines
1.4 KiB
YAML

name: gatk4_variantfiltration
description: Filter variants
keywords:
- vcf
- filter
tools:
- gatk4:
description: |
Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools
with a primary focus on variant discovery and genotyping. Its powerful processing engine
and high-performance computing features make it capable of taking on projects of any size.
homepage: https://gatk.broadinstitute.org/hc/en-us
documentation: https://gatk.broadinstitute.org/hc/en-us/categories/360002369672s
doi: 10.1158/1538-7445.AM2017-3590
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test']
- vcf:
type: list
description: Input VCF file
pattern: "*.{vcf}"
- fasta:
type: file
description: Fasta file of reference genome
pattern: "*.fasta"
- fai:
type: file
description: Index of fasta file
pattern: "*.fasta.fai"
- dict:
type: file
description: Sequence dictionary of fastea file
pattern: "*.dict"
output:
- vcf:
type: file
description: filtered VCF file
pattern: "*.filtered.{vcf}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@kevinmenden"