nf-core_modules/modules/picard/collectwgsmetrics/meta.yml

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1.3 KiB
YAML

name: picard_collectwgsmetrics
description: Collect metrics about coverage and performance of whole genome sequencing (WGS) experiments.
keywords:
- alignment
- metrics
- statistics
- quality
- bam
tools:
- picard:
description: |
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS)
data and formats such as SAM/BAM/CRAM and VCF.
homepage: https://broadinstitute.github.io/picard/
documentation: https://broadinstitute.github.io/picard/
input:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- bam:
type: file
description: BAM file
pattern: "*.{bam}"
- fasta:
type: file
description: Genome fasta file
output:
- meta:
type: map
description: |
Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]
- metrics:
type: file
description: Alignment metrics files generated by picard
pattern: "*_{metrics}"
- versions:
type: file
description: File containing software versions
pattern: "versions.yml"
authors:
- "@drpatelh"
- "@flowuenne"
- "@lassefolkersen"