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46 lines
1.1 KiB
Text
46 lines
1.1 KiB
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SLIMFASTQ } from '../../../modules/slimfastq/main.nf'
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workflow test_slimfastq_single_end {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true)
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]
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SLIMFASTQ ( input )
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}
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workflow test_slimfastq_paired_end {
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input = [
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[ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true)]
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]
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SLIMFASTQ ( input )
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}
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workflow test_slimfastq_nanopore {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['sarscov2']['nanopore']['test_fastq_gz'], checkIfExists: true)
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]
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SLIMFASTQ ( input )
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}
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workflow test_slimfastq_pacbio {
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input = [
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[ id:'test', single_end:true ], // meta map
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file(params.test_data['homo_sapiens']['pacbio']['ccs_fq_gz'], checkIfExists: true)
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]
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SLIMFASTQ ( input )
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}
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