mirror of
https://github.com/MillironX/nf-core_modules.git
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1f465a63d0
* bbmap/bbduk module created * created bbmap/bbduk module * updated main.nf * changed test.yml tags * removed whitespaces * Adjusted main.nf spacing * whitespace, tags * fix optional files, tags, tidy code * fix suffix * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
47 lines
1.7 KiB
YAML
47 lines
1.7 KiB
YAML
- name: bbmap bbduk test_bbmap_bbduk_single_end
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command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_single_end -c tests/config/nextflow.config
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tags:
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- bbmap/bbduk
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files:
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- path: output/bbmap/test.trim.bbduk.log
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contains:
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- "Input is being processed as unpaired"
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- path: output/bbmap/test.trim.fastq.gz
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md5sum: a87d0cbd5ced7df8bf1751e4cb407482
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- name: bbmap bbduk test_bbmap_bbduk_paired_end
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command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_paired_end -c tests/config/nextflow.config
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tags:
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- bbmap/bbduk
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files:
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- path: output/bbmap/test.trim.bbduk.log
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contains:
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- "Input is being processed as paired"
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- path: output/bbmap/test.trim_1.fastq.gz
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md5sum: a87d0cbd5ced7df8bf1751e4cb407482
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- path: output/bbmap/test.trim_2.fastq.gz
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md5sum: 406e068fbe198f02b48e7e210cc0c69f
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- name: bbmap bbduk test_bbmap_bbduk_se_ref
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command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_se_ref -c tests/config/nextflow.config
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tags:
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- bbmap/bbduk
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files:
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- path: output/bbmap/test.trim.bbduk.log
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contains:
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- "Input is being processed as unpaired"
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- path: output/bbmap/test.trim.fastq.gz
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md5sum: 3970e82605c7d109bb348fc94e9eecc0
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- name: bbmap bbduk test_bbmap_bbduk_pe_ref
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command: nextflow run tests/software/bbmap/bbduk -entry test_bbmap_bbduk_pe_ref -c tests/config/nextflow.config
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tags:
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- bbmap/bbduk
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files:
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- path: output/bbmap/test.trim.bbduk.log
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contains:
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- "Input is being processed as paired"
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- path: output/bbmap/test.trim_1.fastq.gz
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md5sum: 3970e82605c7d109bb348fc94e9eecc0
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- path: output/bbmap/test.trim_2.fastq.gz
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md5sum: 3970e82605c7d109bb348fc94e9eecc0
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