nf-core_modules/tests/software/hmmer/hmmalign/test.yml at 45f2f1ee5f5ed9400b6566e2989dc14c1df62316 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-11-14 05:43:08 +00:00

Daniel Lundin d7a3286a9a

New module to use hmmalign from HMMER to align sequences (#470 )

* Ignore vim tmp files

* Added hmmalign module, not yet tests

* Test output

* Replaced functions.nf for hmmalign with upstream

* Update software/hmmer/hmmalign/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update software/hmmer/hmmalign/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update software/hmmer/hmmalign/meta.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update tests/software/hmmer/hmmalign/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update tests/software/hmmer/hmmalign/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update tests/software/hmmer/hmmalign/test.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update tests/config/pytest_software.yml

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

* Update software/hmmer/hmmalign/main.nf

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>

2021-04-28 11:21:24 +01:00

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YAML

Raw Blame History

 - name: hmmer hmmalign test_hmmer_hmmalign
   command: nextflow run tests/software/hmmer/hmmalign -entry test_hmmer_hmmalign -c tests/config/nextflow.config
   tags:
     - hmmer
     - hmmer/hmmalign
   files:
     - path: output/hmmer/test.sthlm.gz
       md5sum: ddaa8b96291edf4e1a929a224329161b