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cc8439a167
* add software/pairtools * create a branch for pairtools/flip * fix the issue of PG line in output * remove custom code from test. Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
14 lines
542 B
Text
14 lines
542 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { PAIRTOOLS_FLIP } from '../../../../software/pairtools/flip/main.nf' addParams( options: [:] )
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workflow test_pairtools_flip {
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input = [ [ id:'test', single_end:false ], // meta map
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file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.4flip.pairs", checkIfExists: true) ]
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sizes = file("https://raw.githubusercontent.com/open2c/pairtools/master/tests/data/mock.chrom.sizes", checkIfExists:true)
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PAIRTOOLS_FLIP ( input, sizes )
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}
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