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460a3ed87b
* adding template for module groupreadsbyumi * update modules with code * strategy is required argument so moving it to input rather than options.args * tests successful committing yml * added meta to output Co-authored-by: Gregor Sturm <mail@gregor-sturm.de>
15 lines
474 B
Text
15 lines
474 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FGBIO_GROUPREADSBYUMI } from '../../../../modules/fgbio/groupreadsbyumi/main.nf' addParams( options: [:] )
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workflow test_fgbio_groupreadsbyumi {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['homo_sapiens']['illumina']['test_paired_end_umi_unsorted_tagged_bam'], checkIfExists: true) ]
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strategy = "Adjacency"
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FGBIO_GROUPREADSBYUMI ( input, strategy )
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}
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