mirror of
https://github.com/MillironX/nf-core_modules.git
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be390a25e5
* adding fasttree module * correct trailing whitespace * using sarscov2 as a test dir * remove TODO * update test data naming * further test data naming updates * remove options in favour of $options.args * ensure non standard exit codes don't cause an issue * update md5sum
32 lines
926 B
YAML
32 lines
926 B
YAML
name: fasttree
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description: Produces a Newick format phylogeny from a multiple sequence alignment. Capable of bacterial genome size alignments.
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keywords:
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- phylogeny
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- newick
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tools:
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- fasttree:
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description: FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences
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homepage: http://www.microbesonline.org/fasttree/
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documentation: http://www.microbesonline.org/fasttree/#Usage
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tool_dev_url: None
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doi: ""
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licence: ['GPL v2']
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input:
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- alignment:
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type: file
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description: A FASTA format multiple sequence alignment file
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pattern: "*.{fasta,fas,fa,mfa}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- phylogeny:
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type: file
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description: A phylogeny in Newick format
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pattern: "*.{tre}"
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authors:
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- "@aunderwo"
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