mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-13 13:23:09 +00:00
50eafb19c6
* Update version for log4j vulnerability * update checksums * update checksums * update checksums * Remove todo string * remove werid output paths * remove werid output paths * remove werid output paths * Update various checksums * Update various checksums * Remove unstable md5sums * Update md5sums * Fix pileupsummary * Fix genotypegvcfs * Update test files mutect2 * hm genotypevcf updated again * Update some mutect checksums and whatnot * Fix last mutect checksum * Apply suggestion to use mtochondria data instead
32 lines
1.3 KiB
YAML
32 lines
1.3 KiB
YAML
- name: gatk4 applybqsr test_gatk4_applybqsr
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: 8fe7c4b5fcfb72d24ed8102eb26e42fb
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: 8a2fb7c7e38f24d3fefd5e84da701b00
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_intervals
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_intervals -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: a7a1d1373ac1529abbc5e05359718ab1
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: 550eecbb88887fadf8c62c5992ae48af
|
|
|
|
- name: gatk4 applybqsr test_gatk4_applybqsr_cram
|
|
command: nextflow run tests/modules/gatk4/applybqsr -entry test_gatk4_applybqsr_cram -c tests/config/nextflow.config -c ./tests/modules/gatk4/applybqsr/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/applybqsr
|
|
files:
|
|
- path: output/gatk4/test.bam
|
|
md5sum: a333f80284a89a8daab28d3686a0b365
|
|
- path: output/gatk4/versions.yml
|
|
md5sum: 57933f27b3a31b05af3f7c248d365396
|