GCJMackenzie 3c4eaec52b Update for mutect2: add output channel for stats file (#716) ... * added output channel for stats file, updated meta yml with description and test yml with check for stats file * Update modules/gatk4/mutect2/main.nf Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>		2021-09-17 09:56:56 +01:00
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applybqsr	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
baserecalibrator	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
bedtointervallist	fix: update to gatk4.2.0.0 (#580)	2021-07-16 11:25:22 +02:00
createsequencedictionary	fix: update to gatk4.2.0.0 (#579)	2021-07-16 11:24:29 +02:00
fastqtosam	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
getpileupsummaries	Getpileupsummaries (#689)	2021-09-13 16:04:14 +01:00
haplotypecaller	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
intervallisttools	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
markduplicates	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
mergebamalignment	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00
mergevcfs	fix: update to gatk4.2.0.0 (#578)	2021-07-16 11:23:08 +02:00
mutect2	Update for mutect2: add output channel for stats file (#716)	2021-09-17 09:56:56 +01:00
revertsam	fix: update to gatk4.2.0.0 (#577)	2021-07-16 11:22:01 +02:00
samtofastq	fix: update to gatk4.2.0.0 (#576)	2021-07-16 11:18:27 +02:00
splitncigarreads	fix: update to gatk4.2.0.0 (#575)	2021-07-16 11:26:28 +02:00
variantfiltration	Rename software/ directory to modules/ to re-organise module structure (#567)	2021-07-07 10:10:18 +01:00