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* Update README * Rename pytest_software.yml to pytest_modules.yml * Rename main software directory to modules * Remove deprecated modules * Rename tests software to modules * Replace paths for tests in pytest_modules.yml * Replace software with modules in Github Actions * Replace software with modules in main.nf tests * Rename software to modules in test.yml
34 lines
936 B
YAML
34 lines
936 B
YAML
name: hisat2_extractsplicesites
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description: Extracts splicing sites from a gtf files
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keywords:
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- splicing
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- gtf
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- genome
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- reference
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tools:
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- hisat2:
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description: HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome.
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homepage: https://daehwankimlab.github.io/hisat2/
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documentation: https://daehwankimlab.github.io/hisat2/manual/
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doi: "10.1038/s41587-019-0201-4"
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licence: ['MIT']
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input:
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- gtf:
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type: file
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description: Reference gtf annotation file
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pattern: "*.{gtf}"
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output:
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- version:
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type: file
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description: File containing software version
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pattern: "*.{version.txt}"
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- splicesites:
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type: file
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description: Splices sites in gtf file
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pattern: "*.{splice_sites.txt}"
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authors:
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- "@ntoda03"
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