mirror of
https://github.com/MillironX/nf-core_modules.git
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45dee96bdf
* Specify more guidelines on input channels * Linting * Updates based on code review * Update README.md * Fix broken sentence * Add bwa/aln module * Also output reads as required with SAI * fix container paths * Sync bwa version samese/sampe * Apply suggestions from code review Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
39 lines
1.5 KiB
YAML
39 lines
1.5 KiB
YAML
- name: bwa aln single-end
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command: nextflow run ./tests/modules/bwa/aln -entry test_bwa_aln_single_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/aln
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files:
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- path: ./output/bwa/test.sai
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md5sum: aaaf39b6814c96ca1a5eacc662adf926
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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- name: bwa aln paired-end
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command: nextflow run ./tests/modules/bwa/aln -entry test_bwa_aln_paired_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa/aln
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files:
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- path: ./output/bwa/test.1.sai
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md5sum: aaaf39b6814c96ca1a5eacc662adf926
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- path: ./output/bwa/test.2.sai
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md5sum: b4f185d9b4cb256dd5c377070a536124
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- path: ./output/index/bwa/genome.bwt
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md5sum: 0469c30a1e239dd08f68afe66fde99da
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- path: ./output/index/bwa/genome.amb
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md5sum: 3a68b8b2287e07dd3f5f95f4344ba76e
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- path: ./output/index/bwa/genome.ann
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md5sum: c32e11f6c859f166c7525a9c1d583567
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- path: ./output/index/bwa/genome.pac
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md5sum: 983e3d2cd6f36e2546e6d25a0da78d66
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- path: ./output/index/bwa/genome.sa
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md5sum: ab3952cabf026b48cd3eb5bccbb636d1
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