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https://github.com/MillironX/nf-core_modules.git
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3c4eaec52b
* added output channel for stats file, updated meta yml with description and test yml with check for stats file * Update modules/gatk4/mutect2/main.nf Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
1.2 KiB
YAML
33 lines
1.2 KiB
YAML
- name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.f1r2.tar.gz
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: 6ecb874e6a95aa48233587b876c2a7a9
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_tumor_single
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_single -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: e7ef613f7d158b8a0adf44abe5db2029
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- path: output/gatk4/test.vcf.gz.tbi
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- name: gatk4 mutect2 test_gatk4_mutect2_generate_pon
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command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_generate_pon -c tests/config/nextflow.config
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tags:
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- gatk4
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- gatk4/mutect2
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files:
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- path: output/gatk4/test.vcf.gz
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- path: output/gatk4/test.vcf.gz.stats
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md5sum: 4f77301a125913170b8e9e7828b4ca3f
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- path: output/gatk4/test.vcf.gz.tbi
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