mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-14 13:43:09 +00:00
3c4eaec52b
* added output channel for stats file, updated meta yml with description and test yml with check for stats file * Update modules/gatk4/mutect2/main.nf Co-authored-by: GCJMackenzie <gavin.mackenzie@nibsc.org> Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
33 lines
1.2 KiB
YAML
33 lines
1.2 KiB
YAML
- name: gatk4 mutect2 test_gatk4_mutect2_tumor_normal_pair
|
|
command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_normal_pair -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/mutect2
|
|
files:
|
|
- path: output/gatk4/test.f1r2.tar.gz
|
|
- path: output/gatk4/test.vcf.gz
|
|
- path: output/gatk4/test.vcf.gz.stats
|
|
md5sum: 6ecb874e6a95aa48233587b876c2a7a9
|
|
- path: output/gatk4/test.vcf.gz.tbi
|
|
|
|
- name: gatk4 mutect2 test_gatk4_mutect2_tumor_single
|
|
command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_tumor_single -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/mutect2
|
|
files:
|
|
- path: output/gatk4/test.vcf.gz
|
|
- path: output/gatk4/test.vcf.gz.stats
|
|
md5sum: e7ef613f7d158b8a0adf44abe5db2029
|
|
- path: output/gatk4/test.vcf.gz.tbi
|
|
|
|
- name: gatk4 mutect2 test_gatk4_mutect2_generate_pon
|
|
command: nextflow run tests/modules/gatk4/mutect2 -entry test_gatk4_mutect2_generate_pon -c tests/config/nextflow.config
|
|
tags:
|
|
- gatk4
|
|
- gatk4/mutect2
|
|
files:
|
|
- path: output/gatk4/test.vcf.gz
|
|
- path: output/gatk4/test.vcf.gz.stats
|
|
md5sum: 4f77301a125913170b8e9e7828b4ca3f
|
|
- path: output/gatk4/test.vcf.gz.tbi
|