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applybqsr
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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baserecalibrator
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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bedtointervallist
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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calculatecontamination
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new module: gatk4/calculatecontamination (#778)
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2021-10-05 22:52:00 +01:00 |
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createsequencedictionary
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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createsomaticpanelofnormals
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FIX: Createsomaticpanelofnormals add requested test changes (#983)
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2021-10-29 17:45:32 +01:00 |
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estimatelibrarycomplexity
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Add gatk4/estimatelibrarycomplexity (#965)
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2021-10-28 17:49:27 +02:00 |
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fastqtosam
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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filtermutectcalls
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Filtermutectcalls (#796)
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2021-10-23 18:45:19 +01:00 |
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genomicsdbimport
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bug fixes: genomicsdbimport (#1035)
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2021-11-06 15:51:15 +00:00 |
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getpileupsummaries
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Getpileupsummaries (#689)
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2021-09-13 16:04:14 +01:00 |
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haplotypecaller
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Update to allow cram + update needed to use the gatk4 modules in sarek (#976)
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2021-10-29 13:01:05 +02:00 |
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intervallisttools
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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learnreadorientationmodel
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Learnreadorientationmodel (#794)
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2021-10-07 13:55:06 +01:00 |
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markduplicates
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fix: actually do the tests for multiple files (#1058)
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2021-11-10 16:26:34 +01:00 |
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mergebamalignment
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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mergevcfs
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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mutect2
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Mutect2 add mitochondria mode and update tests (#967)
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2021-10-29 11:27:56 +01:00 |
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revertsam
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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samtofastq
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
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splitncigarreads
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fix: update to gatk4.2.0.0 (#575)
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2021-07-16 11:26:28 +02:00 |
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variantfiltration
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Rename software/ directory to modules/ to re-organise module structure (#567)
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2021-07-07 10:10:18 +01:00 |
